BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC2ZC10RM1.SCF screened BAC_end (1051 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1775 1132 0.0 >3x_Contig1775 Length = 26320 Score = 1132 bits (571), Expect = 0.0 Identities = 698/733 (95%), Gaps = 6/733 (0%) Strand = Plus / Minus Query: 48 ctagatttgtatggtcgccaataacaatctaatagatccggagaacaaatctcttgtcaa 107 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3301 ctagatttgtatg-tcgccaataacaatctaatagatccggagaacaaatctcttgtcaa 3243 Query: 108 atatgatgatacgctttatcaaatgtctaacagagctccccaaaatggtggaatacagaa 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3242 atatgatgatacgctttatcaaatgtctaacagagctccccaaaatggtggaatacagaa 3183 Query: 168 aattgcaagagggctaatagtttcgcccactttcctctcaaaaaacttcaacacctattt 227 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3182 aattgcaagagggctaatagtttcgcccactttcctctcaaaaaacttcaacacctacca 3123 Query: 228 tctaatctacaagcctaatggtgaaccgcttctcaaagtaccagagaagggacccatccc 287 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3122 ccaaatctacaagcctaatggtgaaccgcttctcaaagtaccagagaagggacccatccc 3063 Query: 288 aactcttgaaattgtcacggagaagaaaattggtaggaaggtcatcacaagagtcactaa 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3062 aactcttgaaattgtcacggagaagaaaattggtaggaaggtcatcacaagagtcactaa 3003 Query: 348 ttttgaaaagtttaaaattgactctgaagaattagctgctgcattaagaaagaagtgcag 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3002 ttttgaaaagtttaaaattgactctgaagaattagctgctgcattaagaaagaagtgcag 2943 Query: 408 cggatccaccaccattggtgagtctaaatcgacgaaaactgctgaagtccaggttcaggg 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2942 cggatccaccaccattggtgagtctaaatcgacgaaaactgctgaagtccaggttcaggg 2883 Query: 468 tccacacggttcaatcgtaatctctattttgaatgactacggtattcctactaaatggat 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2882 tccacacggttcaatcgtaatctctattttgaatgactacggtattcctactaaatggat 2823 Query: 528 ttcgtttgaaaataaagtcaaaccanaacaaaagaagaagctgntaggtacacttatgca 587 ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 2822 ttcgtttgaaaataaagtcaaaccaaaacaaaagaagaagctgtaaggtacacttatgca 2763 Query: 588 gataggcattatgtgaaactgctctttgggttctttccagggcccttgatatcataaatt 647 |||||||||||||||||||||||||||| | ||||||||||||| | |||||||| || Sbjct: 2762 gataggcattatgtgaaactgctctttgtggtctttccagggccttgtatatcatagata 2703 Query: 648 actcatcttctttctcgtcttattaaccctacat-aacaggatacccatttcattttacc 706 |||||||||||| ||||||||||| | ||||||| ||||| ||||| ||| ||| ||||| Sbjct: 2702 actcatcttcttcctcgtcttattca-cctacataaacagtataccaattacatattacc 2644 Query: 707 cgggattggtcgatgttataaaaattttttaacttttagtataaggattaggtggaatta 766 | ||||| ||||||| ||| |||||||||| | |||||||||| |||||| ||| |||| Sbjct: 2643 c-ggatttgtcgatg-tatcaaaattttttcagctttagtataatgattagttgg-atta 2587 Query: 767 aaattttggaagc 779 |||| |||||||| Sbjct: 2586 aaatcttggaagc 2574 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8147 Number of Sequences: 1807 Number of extensions: 8147 Number of successful extensions: 62 Number of sequences better than 1.0e-20: 1 length of query: 1051 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1035 effective length of database: 10,329,639 effective search space: 10691176365 effective search space used: 10691176365 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)