BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZC11FM1.SCF screened BAC_end
         (999 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1697                                                        1324   0.0  

>3x_Contig1697 
          Length = 16220

 Score = 1324 bits (668), Expect = 0.0
 Identities = 683/688 (99%)
 Strand = Plus / Minus

                                                                         
Query: 88    caaaactacacgatattaacgataagcagatcactggacccagatactggtactctgcac 147
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10465 caaaactaaacgatattaacgataagcagatcactggacccagatactggtactctgcac 10406

                                                                         
Query: 148   agcgcgagatatatctatatctatatatatatatatatatattcacacaagaatagaaca 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10405 agcgcgagatatatctatatctatatatatatatatatatattcacacaagaatagaaca 10346

                                                                         
Query: 208   agataatcacatcacgtgattagagctgtacctcttccagctaaactagcagacaataac 267
             |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 10345 agataatcacatcacgtgacaagagctgtacctcttccagctaaactagcagacaataac 10286

                                                                         
Query: 268   ttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgcagagaat 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10285 ttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgcagagaat 10226

                                                                         
Query: 328   gcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccctgtact 387
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10225 gcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccctgtact 10166

                                                                         
Query: 388   tagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcgggaatt 447
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10165 tagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcgggaatt 10106

                                                                         
Query: 448   tgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaaccagtattc 507
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10105 tgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaaccagtattc 10046

                                                                         
Query: 508   atgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgtttctccga 567
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10045 atgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgtttctccga 9986

                                                                         
Query: 568   cgtttgtcaggagacttgcattgacaagtgttattcttgttttgtttggttgagggcttt 627
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9985  cgtttgtcaggagacttgcattgacaagtgttattcttgttttgtttggttgagggcttt 9926

                                                                         
Query: 628   cctgttacactatgtcgatctgtttatccatgtttcaagttccgccagttgtgtaagttt 687
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 9925  cctgttacactatgtcgatctgtttatccatgtttcaagttccgccagttgtgtaagttc 9866

                                                                         
Query: 688   cggtgcgcaaacatgatacgaagagcgaatggtaaactaagttaaacttgcatgagagtt 747
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9865  cggtgcgcaaacatgatacgaagagcgaatggtaaactaagttaaacttgcatgagagtt 9806

                                         
Query: 748   tacgcagtgattttgggctgctactgct 775
             ||||||||||||||| ||||||||||||
Sbjct: 9805  tacgcagtgattttgtgctgctactgct 9778


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,699
Number of Sequences: 1807
Number of extensions: 16699
Number of successful extensions: 2526
Number of sequences better than 1.0e-20: 1
length of query: 999
length of database: 10,358,551
effective HSP length: 16
effective length of query: 983
effective length of database: 10,329,639
effective search space: 10154035137
effective search space used: 10154035137
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)