BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC11RM1.SCF screened BAC_end
(1027 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig147 1524 0.0
>3x_Contig147
Length = 1050
Score = 1524 bits (769), Expect = 0.0
Identities = 850/874 (97%), Gaps = 3/874 (0%)
Strand = Plus / Minus
Query: 42 cttcacataagttaagagccacaccattcagctttcaaactaactaagaaaacctcacaa 101
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 873 cttcacataagttaagagccacaccac-cagctttcaaactaactaagaaaacctcacaa 815
Query: 102 tggatattctccataaaatatttaattgtttgatctctttgagtgggagtcatactgcct 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tggatattctccataaaatatttaattgtttgatctctttgagtgggagtcatactgcct 755
Query: 162 tgcaatttaactgtttggaaacctgcacgttttaatctccattcaacaagatctaacatt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tgcaatttaactgtttggaaacctgcacgttttaatctccattcaacaagatctaacatt 695
Query: 222 tatgtgaattgggaaaagacaatcgacttgatcgtgcgcttgtcacttctcaagttgtat 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gatgtgaattgggaaaagacaatcgacttgatcgtgcgcttgtcacttctcaagttgtat 635
Query: 282 aactcctcaaccaaagcctcaatcttagtggaggacctccatttacctcccatttttaac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aactcctcaaccaaagcctcaatcttagtggaggacctccatttacctcccatttttaac 575
Query: 342 cgactgacaatactttgctttttgaatagttcttcatcaacttcaagagcttgttgttgt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cgactgacaatactttgctttttgaatagttcttcatcaacttcaagagcttgttgttgt 515
Query: 402 aaatcgatactgagtccaatgtgacataccggacatgttagttttttttcatctgccatg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaatcgatactgagtccaatgtgacataccggacatgttagttttttttcatctgccatg 455
Query: 462 aaagaatcaatatattcgttgatgcagaggcgacaaaacctatgatggcatttggattca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaagaatcaatatattcgttgatgcagaggcgacaaaacctatgatggcatttggattca 395
Query: 522 attggttcttcagcttcatcatcacataactgacagataataacaccggggttattatca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 attggttcttcagcttcatcatcacataactgacagataataacaccggggttattatca 335
Query: 582 ttatttcccttgagccttttcaatactagatcaggatggtccgccatctgtctcattcta 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttatttcccttgagccttttcaatactagatcaggatggtccgccatctgtctcattcta 275
Query: 642 gtgattaaggtaaagatattagcataattattcaaaaccacaccttcctcaacataagag 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtgattaaggtaaagatattagcataattattcaaaaccacaccttcctcaacataagag 215
Query: 702 ttatacttccttttgatgtccgagtataaactttgatagagatccttctnctcttcgntt 761
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 214 ttatacttccttttgatgtccgagtataaactttgatagagatccttctcctcttcgttg 155
Query: 762 gagtaatcctttctacaagt-acgattcttggtggcantccaaggtcgtccgctctttcc 820
|||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 154 aagtaatcctttctaacagtaacgattcttggtggcaatccaaggtcgtccgctctttcc 95
Query: 821 accttggttcttctcaacatgatcctagcc-ataaggccctgatatttttgaaagaatgt 879
||||||||||| |||||||||||||||||| |||||| | ||||||| |||||| |||
Sbjct: 94 accttggttctcctcaacatgatcctagccaataaggtctgaatattttggaaagattgt 35
Query: 880 tgacccggttctttaatgccattgttttggacgt 913
|||||||| ||| ||||||||| ||||| ||||
Sbjct: 34 agacccggtccttcaatgccatttttttgaacgt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8324
Number of Sequences: 1807
Number of extensions: 8324
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 1027
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1011
effective length of database: 10,329,639
effective search space: 10443265029
effective search space used: 10443265029
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)