BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC12FM1.SCF screened BAC_end
(994 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1398 0.0
>3x_Contig1794
Length = 36744
Score = 1398 bits (705), Expect = 0.0
Identities = 760/772 (98%), Gaps = 6/772 (0%)
Strand = Plus / Plus
Query: 91 acgcaaatacattgcttccaagctacgatactcatgccgctattccccacagtggctctg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34993 acgcaaatacattgcttccaagctacgatactcatgccgctattccccacagtggctctg 35052
Query: 151 taccattcggtgattctgattttaatatgtatcatgattcgaatctatatttcccaaaac 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35053 taccattcggtgattctgattttaatatgtatcatgattcgaatctatatttcccaaaac 35112
Query: 211 aagtcattatctt--cttttatgtctccggaagttcaaccattagatgagaaaattggat 268
||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35113 aagtcattaactcaccagttatgtctccggaagttcaaccattagatgagaaaattggat 35172
Query: 269 tatcacctgtttcgttaagtcctgtggcccacaacagaaccagtctgagtttactgcagc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35173 tatcacctgtttcgttaagtcctgtggcccacaacagaaccagtctgagtttactgcagc 35232
Query: 329 acagaaatctaagccatagcgaattatcaatatcggaactgaatttaaggaataaagtgt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35233 acagaaatctaagccatagcgaattatcaatatcggaactgaatttaaggaataaagtgt 35292
Query: 389 tgcagtctccagaattatcctctaatatttaccagcctgagcatattcatgctgaattgg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35293 tgcagtctccagaattatcctctaatatttaccagcctgagcatattcatgctgaattgg 35352
Query: 449 cttcacctcaggcattacctttatctccaatttcatctcccacttggaaaccaatatcgc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35353 cttcacctcaggcattacctttatctccaatttcatctcccacttggaaaccaatatcgc 35412
Query: 509 tcgcacaaaatcaaaccatagatgcagtgtctctggacgatgagcttccaccatttcaag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35413 tcgcacaaaatcaaaccatagatgcagtgtctctggacgatgagcttccaccatttcaag 35472
Query: 569 aagctcttaaagcagagtctctacctgtcgatccacctacatattcggagtcagttgcaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35473 aagctcttaaagcagagtctctacctgtcgatccacctacatattcggagtcagttgcaa 35532
Query: 629 ctgatggtaagacgacaaagtcaaaagctagcagcgaggcttcatcggtggtgggttcct 688
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 35533 ctgatggtaagacgacaaagtcaaaagctagcagcgaggcttcatcggtggt-ggttcct 35591
Query: 689 g-aatatgcctttcc-atactacagatttggtagatgaagacattgctgcagggttccac 746
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35592 gaaatatgcctttccaatactacagatttggtagatgaagacattgctgcagggttccac 35651
Query: 747 ttcaatgg-aatgatagcggatctttaaatcttccgactgcaatgatgagatcccactca 805
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35652 ttcaatggaaatgatagcggatctttaaatcttccgactgcaatgatgagatcccactca 35711
Query: 806 caccttgataggacagcagtttctcgtaaatcatctgtttctgggaggagac 857
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35712 cacaatgataggacagcagtttctcgtaaatcatctgtttctgggaggagac 35763
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6389
Number of Sequences: 1807
Number of extensions: 6389
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)