BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC12RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1116 0.0
>3x_Contig1794
Length = 36744
Score = 1116 bits (563), Expect = 0.0
Identities = 642/659 (97%), Gaps = 7/659 (1%)
Strand = Plus / Minus
Query: 43 cttgatcgatcagattgttcaaaggtctgaaataaactctatcctaggaagtgctgggct 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36714 cttgatcgatcagattgttcaaaggtctgaaataaactctatcctaggaagtgctgggct 36655
Query: 103 agcacgacttgaaagtttaagaaaaaaatacattaattactatgtctcggattggagaga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36654 agcacgacttgaaagtttaagaaaaaaatacattaattactatgtctcggattggagaga 36595
Query: 163 tctcacctctattcttttggatcaaatatttgttgatagctctggtaaagtttcattatt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 36594 tctcacctctattcttttggatcaaatatttgttgatagctctggtaaagtttcatcaaa 36535
Query: 223 ttttaaggatcaaatcaaagaaaagttcaagaagtttcatgatggattcgaagacttggt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36534 agaaaaggatcaaatcaaagaaaagttcaagaagtttcatgatggattcgaagacttggt 36475
Query: 283 atccagatcaaaatcgtaccgtatttctgatccagctctaaaaaaaatattgagacaaga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36474 atccagatcaaaatcgtaccgtatttctgatccagctctaaaaaaaatattgagacaaga 36415
Query: 343 gatcctttcgttggtactccctatgtatgaacgtttctacaaccgttataaggactcctt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36414 gatcctttcgttggtactccctatgtatgaacgtttctacaaccgttataaggactcctt 36355
Query: 403 taaacatcccagaaaacacatcaaatatactccctctgagttgatgaacgttcttaatac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36354 taaacatcccagaaaacacatcaaatatactccctctgagttgatgaacgttcttaatac 36295
Query: 463 tatcattaaataagaactacatatttaataaatctttgtctatagaatctgatatgtttg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36294 tatcattaaataagaactacatatttaataaatctttgtctatagaatctgatatgtttg 36235
Query: 523 ttggttcaggagattcacgctgattatacctttctaggttattcttgaaatccttc-aag 581
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 36234 ttggttcaggagattcacgctgattatacctttctaggttattcttgaaatcctccaaag 36175
Query: 582 catgattggactgc-aaacattcatcgaatttgattgtgaaagcaat-gagacatcgctt 639
|||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 36174 catgattggactgcaaaacattcatcgaatatgattgtgaaagcaatggagacatcgctg 36115
Query: 640 gttcactttgca-tgggtgccaaga-gtgccgctc-ttgcctatcattgcagttaggtc 695
|||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct: 36114 gttcactttgcagtgggtgccaagatgtg-cgctctttgcctatcattgcagttaggtc 36057
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9307
Number of Sequences: 1807
Number of extensions: 9307
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)