BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC2ZD01FM1.SCF screened BAC_end (1022 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1792 1158 0.0 >3x_Contig1792 Length = 28468 Score = 1158 bits (584), Expect = 0.0 Identities = 623/634 (98%), Gaps = 2/634 (0%) Strand = Plus / Minus Query: 83 cgaagtgatggcaactgcactggcttattctgattcaaactgggtaacaatccttccggt 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6442 cgaagtgatggcaactgcactggcttattctgattcaaactgggtaacaatccttccggt 6383 Query: 143 ggaggactgtgcgttggagtgcacagtaaatttgaaaaatgactttggaaatagtaatct 202 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 6382 ggaggactgtgcgttggagtgcacagtaaacttgaaaaatgactttggaaatagtaatct 6323 Query: 203 ttttcgtccttactgttccn-atcggtagttgatccatcgatctaagccttgaatgaagt 261 ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct: 6322 ttttcgtccttactgttccttaccggcagttgatccatcgatctaagccttgaatgaagt 6263 Query: 262 tcatcataaaattctccttctgtagctgagccggaacttggtggcattgtagaactaggt 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6262 tcatcataaaattctccttctgtagctgagccggaacttggtggcattgtagaactaggt 6203 Query: 322 ctcatgatgggcattatggcttttgatttcttaagtggccggccatatgcatcttctgta 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6202 ctcatgatgggcattatggcttttgatttcttaagtggccggccatatgcatcttctgta 6143 Query: 382 ctcatatcctcatcttgtgagattacggtttcttgcttcagtagagtagatatgcttaca 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6142 ctcatatcctcatcttgtgagattacggtttcttgcttcagtagagtagatatgcttaca 6083 Query: 442 gtacttgaatttcttgaatgttgatctatcagttggttgagactattggatgacgagaat 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6082 gtacttgaatttcttgaatgttgatctatcagttggttgagactattggatgacgagaat 6023 Query: 502 ctggagttaagtgcagaggagctgaagcccgatggtgattgctgttccgacagatttgtc 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6022 ctggagttaagtgcagaggagctgaagcccgatggtgattgctgttccgacagatttgtc 5963 Query: 562 cacgatctggttctaggcagaccgttacttatatactcgttatcaacanactcggtcaat 621 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 5962 cacgatctggttctaggcagaccgttacttatatactcgttatcaacaaactcggtcaat 5903 Query: 622 ggtcggttgggtgcgggatggtgaagatgtactagattctgttgcgaa-gattatatgac 680 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 5902 ggtcggttgggtgcgggatggtgaagatgtactagattctgttgcgaatgattatatgac 5843 Query: 681 tctgaattttgagaccaggggggtattctttgta 714 ||||||||||||||| |||| | |||||||||| Sbjct: 5842 tctgaattttgagacaagggtgtcattctttgta 5809 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6129 Number of Sequences: 1807 Number of extensions: 6129 Number of successful extensions: 40 Number of sequences better than 1.0e-20: 1 length of query: 1022 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1006 effective length of database: 10,329,639 effective search space: 10391616834 effective search space used: 10391616834 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)