BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD01RM1.SCF screened BAC_end
(1045 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig679 1156 0.0
>3x_Contig679
Length = 2347
Score = 1156 bits (583), Expect = 0.0
Identities = 714/747 (95%), Gaps = 8/747 (1%)
Strand = Plus / Plus
Query: 161 ttatttatgttcgttctttggagaatgtcggatactaacatggaagttgtcatcaataat 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatttatgttcgttctttggagaatgtcggatactaacatggaagttgtcatcaataat 60
Query: 221 gtattttaggtttatgtcgaagtaataattagaggcattgtaattgctgtgtataaacag 280
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 g-agaaaaggtttatgtcgaagtaataattagaggcattgtaattgctgtgtataaacag 119
Query: 281 tacactttaaagtaaggtaggagttcactggtagcaacttttgagtatatatatttacaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tacactttaaagtaaggtaggagttcactggtagcaacttttgagtatatatatttacaa 179
Query: 341 gataacatttaatgtgctgcccagtgtttataataaataggaagtaaaggggacaaacaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gataacatttaatgtgctgcccagtgtttataataaataggaagtaaaggggacaaacaa 239
Query: 401 gaaaataattgaaaaaaaaggatccattcgtagttcccaagatcacttcgcaagtttgga 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaaaataattgaaaaaaaaggatccattcgtagttcccaagatcacttcgcaagtttgga 299
Query: 461 agcctcagttaagattttagaagaggccttttgctgttgtgtatagagtccaccggtgag 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agcctcagttaagattttagaagaggccttttgctgttgtgtatagagtccaccggtgag 359
Query: 521 gattctaattgcggctcttggttttctcaattgagaagcaaacaacaatgaacctgtcaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gattctaattgcggctcttggttttctcaattgagaagcaaacaacaatgaacctgtcaa 419
Query: 581 taatgccaaggcaccagcttggtgagcagaagctagagggattggaaccaaatataacaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 taatgccaaggcaccagcttggtgagcagaagctagagggattggaaccaaatataacaa 479
Query: 641 ggtaaaaatacctagagtgactttgtaagtggcaagacccatcataccatgagcagtacg 700
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 480 ggtaaaaatacctagagtgacttgtaaagtggcaagacccatcataccatgagcagtacg 539
Query: 701 tagaacttgtttaggaatgatagccttggtttctggtacagtacatgtggaatgcataca 760
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||
Sbjct: 540 tagaacttgtttaggaatgatagcctt-gtttctgttacagtacatgtggaatgcaaaca 598
Query: 761 cagcggaagaaag-ggttgttgccaaaaattctttgattcagttgaaccggaatttggtt 819
|||| |||||||| |||||| ||| ||||| || |||||||||||||||| | || ||||
Sbjct: 599 cagc-gaagaaagtggttgtagcc-aaaatcctatgattcagttgaaccgtagttgggtt 656
Query: 820 ttccaacatatttctcc-aaacctatcactcttgactttctttcatacaaatttttcggc 878
||||||||||||||||| |||| ||||||||||| ||| |||| |||| |||||| |
Sbjct: 657 ttccaacatatttctccaaaacatatcactcttgtcttcttttctagcaaagttttcgtc 716
Query: 879 -attaatt-acgtttacttggtcccca 903
||||||| ||||||||||||| ||||
Sbjct: 717 gattaattcacgtttacttggtaccca 743
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8501
Number of Sequences: 1807
Number of extensions: 8501
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 1045
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1029
effective length of database: 10,329,639
effective search space: 10629198531
effective search space used: 10629198531
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)