BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD02FM1.SCF screened BAC_end
(1050 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 688 0.0
>3x_Contig1762
Length = 22098
Score = 688 bits (347), Expect = 0.0
Identities = 473/501 (94%), Gaps = 11/501 (2%)
Strand = Plus / Plus
Query: 86 ctcggctactcactaacctcactagtttaatgaattggcctcaaatctggattgactatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8269 ctcggctactcactaacctcactagtttaatgaattggcctcaaatctggattgactatt 8328
Query: 146 accactcgccggaagatcgattacatcccttgacaattgtatttgatcaacccattgatg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8329 accactcgccggaagatcgattacatcccttgacaattgtatttgatcaacccattgatg 8388
Query: 206 aacctccatcgatatttattattttatacagtgctagacaacagtctcatgtcccactaa 265
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 8389 aacctccatcgatattcaagactttatacagtgctagacaacagtctcatgtcccactaa 8448
Query: 266 cgccattcattacactatcacgtctaataaatgacgattcatgcgatattgatgatatcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8449 cgccattcattacactatcacgtctaataaatgacgattcatgcgatattgatgatatcg 8508
Query: 326 tgacccctctaaccaacaaaatgttgaaattgtttcaatccttaacaggcaatacttaca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8509 tgacccctctaaccaacaaaatgttgaaattgtttcaatccttaacaggcaatac-taca 8567
Query: 386 ct-aatctcttacatttactgggacagctgaatattgngaaaactg-attgnaagctcta 443
|| ||||||||||| |||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct: 8568 ctaaatctcttacaattactgggacagctgaatattgggaaaactgaattggaagctcta 8627
Query: 444 cctgtttggatatacgttgcttttgaaaagtttattgttaggatgtttgaaaatgaaatc 503
|||||| ||||||||| ||| ||||||||| ||||||||| |||| ||||||||||||||
Sbjct: 8628 cctgttgggatatacg-tgcctttgaaaaggttattgtta-gatg-ttgaaaatgaaatc 8684
Query: 504 gacccttgttgaacaaaaacctcgatattgatttgaatgaacagaactggatttgcgaat 563
|| || ||||| || ||||| ||||||| ||||||| || |||||||| ||||||||||
Sbjct: 8685 ga-ccatgttg-acgaaaacgtcgatatcgatttgattg-acagaact-gatttgcgaa- 8739
Query: 564 taataaaaaattttatttctt 584
|||||||| |||| |||||||
Sbjct: 8740 taataaaagatttcatttctt 8760
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,497
Number of Sequences: 1807
Number of extensions: 13497
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 1
length of query: 1050
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1034
effective length of database: 10,329,639
effective search space: 10680846726
effective search space used: 10680846726
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)