BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD02RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1045 0.0
>3x_Contig1338
Length = 8134
Score = 1045 bits (527), Expect = 0.0
Identities = 570/578 (98%), Gaps = 5/578 (0%)
Strand = Plus / Minus
Query: 45 aagcttgcatatcgaagacatcacaattaattcagtagacgttcacataaggtaacaatt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6130 aagcttgcatatcgaagacatcacaattaattcagtagacgttcacataaggtaacaatt 6071
Query: 105 ccacagataccagaaacattggacctttcatttccctggttacaaaatttctttgaacgg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6070 ccacagataccagaaacattggacctttcatttccctggttacaaaatttctttgaacgg 6011
Query: 165 aagaattacacagccctaccagagacgaacttctcgacaaaacggctggatcttggttct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6010 aagaattacacagccctaccagagacgaacttctcgacaaaacggctggatcttggttct 5951
Query: 225 aacattttctttggcgactgcaatttaatgaatcagcgtgtcttccaaaagacataatga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5950 aacattttctttggcgactgcaatttaatgaatcagcgtgtcttccaaaagacataatga 5891
Query: 285 ctcccgacagattgagacgtgcagaattctgtcagcgtctttgaaaaaatacctgaacga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5890 ctcccgacagattgagacgtgcagaattctgtcagcgtctttgaaaaaatacctgaacga 5831
Query: 345 ttagtaagaatagatctatgtttttgcagttgtggaccctattgaatttagtacagtcct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5830 ttagtaagaatagatctatgtttttgcagttgtggaccctattgaatttagtacagtcct 5771
Query: 405 gattaagccagggtccttctagggaaaatgtaatctttcggtttaattaggtagcaggga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5770 gattaagccagggtccttctagggaaaatgtaatctttcggtttaattaggtagcaggga 5711
Query: 465 gattgtttgtagccattccggttgtttaaacagcattaagaatagacgatgcttttactg 524
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 5710 gattgtttgtagccattccggttgtttaaacagcattaagattagacgatgctttaactg 5651
Query: 525 attttgngttctttcgtctcaatttatgagtttcttgacgatttgac-aagtcagagctt 583
| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5650 a-tttgtgttctttcgtctcaatttatgagtttcttgacgatttgacaaagtcagagctt 5592
Query: 584 -tttgtctttaa-tctacgcggagtcgt-cacagattg 618
||||||||||| ||||||||||||||| |||||||||
Sbjct: 5591 ctttgtctttaattctacgcggagtcgtacacagattg 5554
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7010
Number of Sequences: 1807
Number of extensions: 7010
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)