BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD03FM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1406 1366 0.0
>3x_Contig1406
Length = 8172
Score = 1366 bits (689), Expect = 0.0
Identities = 749/764 (98%), Gaps = 4/764 (0%)
Strand = Plus / Plus
Query: 84 taacaacctactacggccaatggcgctgtccaagactgacctttaggcagttttctcgtc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6250 taacaacctactacggccaatggcgctgtccaagactgacctttaggcagttttctcgtc 6309
Query: 144 tgaacttcaaagtcacatcaaatcggactcgaatcgaaattttcgaagttttcaaactag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6310 tgaacttcaaagtcacatcaaatcggactcgaatcgaaattttcgaagttttcaaactag 6369
Query: 204 aaaaaagaatcaaattactgttcttaatgtatgaacgaccaactccacaaaacgtaacgg 263
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 6370 aaaaaagaatcaaattactgtaccaaatgtatgaacgaccaactccacaaaacgtaacgg 6429
Query: 264 aattaaccagggtctcgctctctttccagacatccaagactaacgcgcgcacagataaca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6430 aattaaccagggtctcgctctctttccagacatccaagactaacgcgcgcacagataaca 6489
Query: 324 cgaaccacgacttgaaccagaaatgccaccaccaccaaaagtttacggccaacaacaaca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6490 cgaaccacgacttgaaccagaaatgccaccaccaccaaaagtttacggccaacaacaaca 6549
Query: 384 accttcgaactgggaaaagttcaagatgggtttgatgatgggtactaccgttggtgtttg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6550 accttcgaactgggaaaagttcaagatgggtttgatgatgggtactaccgttggtgtttg 6609
Query: 444 tactggcatcttattcggtggtgttgccattgttacacaaggcccaggtccaaacgggtt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6610 tactggcatcttattcggtggtgttgccattgttacacaaggcccaggtccaaacgggtt 6669
Query: 504 tgtgagaaccttagggcagtacatcgctggttctgctgccacttttggcctatttatgag 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6670 tgtgagaaccttagggcagtacatcgctggttctgctgccacttttggcctatttatgag 6729
Query: 564 tatcggttctgtcattagaagtgatggaacttccgacaactcccacaacaatggtttcta 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6730 tatcggttctgtcattagaagtgatggaacttccgacaactcccacaacaatggtttcta 6789
Query: 624 ccatagtaagatggccgaattgcaacagagatcaagatttgaagtatggaaagctaaaca 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6790 ccatagtaagatggccgaattgcaacagagatcaagatttgaagtatggaaagctaaaca 6849
Query: 684 nacttatggtttgtacaaggattaagcg-ttttacccagcaattgtacatgggtcagagg 742
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6850 aacttatggtttgtacaaggattaagcgtttttacccagcaattgtacatgggtcagagg 6909
Query: 743 cagcggtacctactaatc-tttcgtatctactctatttctgtgctctcggtatattttaa 801
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 6910 cagcggtacctactaatcttttcgtatctactctatttctgtcctctcggtatattttta 6969
Query: 802 agtaaaggaattattg-aattaggaattt-agatgatcaatttt 843
|||||| | ||||| || ||||||||| ||||||||||||||
Sbjct: 6970 agtaaaatgaatattgtaaataggaatttaagatgatcaatttt 7013
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6927
Number of Sequences: 1807
Number of extensions: 6927
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)