BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD03RM1.SCF screened BAC_end
(1060 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1503 0.0
3x_Contig1745 1247 0.0
3x_Contig883 833 0.0
>3x_Contig1806
Length = 53694
Score = 1503 bits (758), Expect = 0.0
Identities = 837/857 (97%), Gaps = 5/857 (0%)
Strand = Plus / Minus
Query: 47 tgtttccactcgttcagctcgtttcgctatacaaatgcccagaatctccaagatatttgg 106
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 47473 tgtttccactcgttcagctcgtcgcgctatacaaatgcccagaatctccaagatatttgg 47414
Query: 107 tgttccataatagagatgctgaagcaagagcaatcttgaataaatatcacgcaggaaata 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47413 tgttccataatagagatgctgaagcaagagcaatcttgaataaatatcacgcaggaaata 47354
Query: 167 atgaggaatacgcaggtttgatcgattttgagctggcagaaattaaattggctattgaac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47353 atgaggaatacgcaggtttgatcgattttgagctggcagaaattaaattggctattgaac 47294
Query: 227 aagaaaaagcttcccaatctaccaagttctctgatttcattaaaacttccggtaatcgtc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47293 aagaaaaagcttcccaatctaccaagttctctgatttcattaaaacttccggtaatcgtc 47234
Query: 287 atagattgtggattttgatctggactgcaattttcacacaactttccggaaatggattag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47233 atagattgtggattttgatctggactgcaattttcacacaactttccggaaatggattag 47174
Query: 347 tgtcttactatttatcaaaagtcttcaactccattggtataactgatcctgatgatcaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47173 tgtcttactatttatcaaaagtcttcaactccattggtataactgatcctgatgatcaat 47114
Query: 407 tgaaatggaatggttggttaatgctttacaactggttatgttcactaattttaataggtt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47113 tgaaatggaatggttggttaatgctttacaactggttatgttcactaattttaataggtt 47054
Query: 467 acatcgccccattcttcaaaagaagacaattattcttgatatccttagtttcaatgactt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47053 acatcgccccattcttcaaaagaagacaattattcttgatatccttagtttcaatgactt 46994
Query: 527 cttgttacgttgtgtggacagcattgtctgcagaaaaccaaaagcgtaattttgaggata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46993 cttgttacgttgtgtggacagcattgtctgcagaaaaccaaaagcgtaattttgaggata 46934
Query: 587 agactctagcaaatggagtcttggcaatgatcttcttatattatctttcttacaacttcg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46933 agactctagcaaatggagtcttggcaatgatcttcttatattatctttcttacaacttcg 46874
Query: 647 ggttcaacggtttcccaaatctttacacaactgaaatattaccttacactttgagaggta 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46873 ggttcaacggtttcccaaatctttacacaactgaaatattaccttacactttgagaggta 46814
Query: 707 aagggcttacaattttccagttagccattagtattttagttatattcaatgggtttgtca 766
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 46813 aagggcttacaattttccagttagccattagtatttcagttatattcaatgggtttgtca 46754
Query: 767 attcaattgcaatggatgctattgaat-gaaatacctacaatctttattgctgcntctta 825
|| |||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||
Sbjct: 46753 atccaattgcaatggatgctattgaatggaaata-ctacatcttttattgctgcttctta 46695
Query: 826 tctgttgagaattgtgtttgtaatttcacttttcgttgaaacattaaggaagatctttgg 885
|||||||||| | ||||||| ||||||| |||||||||||| || |||||||||||| |
Sbjct: 46694 tctgttgagattgttgtttgttatttcac-tttcgttgaaac-ttcaggaagatcttt-g 46638
Query: 886 gaaaaagtggatgaggt 902
||| |||| ||||||||
Sbjct: 46637 gaagaagttgatgaggt 46621
>3x_Contig1745
Length = 19830
Score = 1247 bits (629), Expect = 0.0
Identities = 791/840 (94%), Gaps = 4/840 (0%)
Strand = Plus / Plus
Query: 47 tgtttccactcgttcagctcgtttcgctatacaaatgcccagaatctccaagatatttgg 106
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4343 tgtttccactcgttcagctcgtcgcgctatacaaatgcccagaatctccaagatatttgg 4402
Query: 107 tgttccataatagagatgctgaagcaagagcaatcttgaataaatatcacgcaggaaata 166
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4403 tgttccataacagagatgctgaagcaagagcaatcttaaataaatatcacgcaggaaata 4462
Query: 167 atgaggaatacgcaggtttgatcgattttgagctggcagaaattaaattggctattgaac 226
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4463 atgaggaatacgcaggtttgatcgattttgagctagcagaaattaaattggctattgaac 4522
Query: 227 aagaaaaagcttcccaatctaccaagttctctgatttcattaaaacttccggtaatcgtc 286
|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 4523 aagaaaaagcctcccagtctaccaagttctctgatttcattaaaacttctggtaatcgcc 4582
Query: 287 atagattgtggattttgatctggactgcaattttcacacaactttccggaaatggattag 346
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 4583 ataggttgtggattttgatctggactgcaattttcacacaactttccggaaacggtttag 4642
Query: 347 tgtcttactatttatcaaaagtcttcaactccattggtataactgatcctgatgatcaat 406
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4643 tgtcttactatctatcaaaagtcttcaactctattggtataactgatcctgatgatcaat 4702
Query: 407 tgaaatggaatggttggttaatgctttacaactggttatgttcactaattttaataggtt 466
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 tgaaatggaatggttggctaatgctttacaactggttatgttcactaattttaataggtt 4762
Query: 467 acatcgccccattcttcaaaagaagacaattattcttgatatccttagtttcaatgactt 526
|||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||
Sbjct: 4763 acatcgccccattcttcaaaagaagacagttatttttgatatctttagtttccatgactt 4822
Query: 527 cttgttacgttgtgtggacagcattgtctgcagaaaaccaaaagcgtaattttgaggata 586
|||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 4823 cttgctacgttgtttggacagcattgtctgcagaaaaccaaaagcgcaatttcgaggata 4882
Query: 587 agactctagcaaatggagtcttggcaatgatcttcttatattatctttcttacaacttcg 646
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4883 agtctctagcaaatggtgtcttggcaatgatcttcttatattatctttcttacaacttcg 4942
Query: 647 ggttcaacggtttcccaaatctttacacaactgaaatattaccttacactttgagaggta 706
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4943 gattcaacggtttcccaaatctttacacaactgaaatattaccttatactttgagaggta 5002
Query: 707 aagggcttacaattttccagttagccattagtattttagttatattcaatgggtttgtca 766
|||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||
Sbjct: 5003 aagggcttacaattttccagttggccattagcatttcagttatattcaatgggtttgtca 5062
Query: 767 attcaattgcaatggatgctattgaat-gaaatacctacaatctttattgctgcntctta 825
|| || ||||||||||||||||||||| |||||| ||||| ||||||| || |||||
Sbjct: 5063 atccagttgcaatggatgctattgaatggaaata-ctacatcttttattgttgtttctta 5121
Query: 826 tctgttgagaattgtgtttgtaatttcacttttcgttgaaacattaaggaagatctttgg 885
||||||||| ||||||| ||||||| |||||||||||| || ||||||||||||||
Sbjct: 5122 gctgttgagatcgttgtttgttatttcac-tttcgttgaaac-ttcaggaagatctttgg 5179
>3x_Contig883
Length = 3346
Score = 833 bits (420), Expect = 0.0
Identities = 720/815 (88%), Gaps = 4/815 (0%)
Strand = Plus / Plus
Query: 72 gctatacaaatgcccagaatctccaagatatttggtgttccataatagagatgctgaagc 131
||||||||| ||||||||||||||||||||| | || |||||||| |||||| | |||||
Sbjct: 170 gctatacaactgcccagaatctccaagatatcttgttttccataacagagattccgaagc 229
Query: 132 aagagcaatcttgaataaatatcacgcaggaaataatgaggaatacgcaggtttgatcga 191
||| || || ||||| ||||| || ||||| |||||||||||||||| || ||||||||
Sbjct: 230 aagggccattttgaacaaataccatgcaggtgataatgaggaatacgcgggcttgatcga 289
Query: 192 ttttgagctggcagaaattaaattggctattgaacaagaaaaagcttcccaatctaccaa 251
|||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct: 290 ttttgaattggcagaaattaaactggctattgaacaagaaaaagcttctcaagctaccaa 349
Query: 252 gttctctgatttcattaaaacttccggtaatcgtcatagattgtggattttgatctggac 311
|||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 350 cttctctgatttctttaaaacctccggtaatcgccatagattgtggattttgatctggac 409
Query: 312 tgcaattttcacacaactttccggaaatggattagtgtcttactatttatcaaaagtctt 371
||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct: 410 tgcaattttcacacaactttccggaaatggattggtgtcttactatctatccaaagtctt 469
Query: 372 caactccattggtataactgatcctgatgatcaattgaaatggaatggttggttaatgct 431
||| || |||||||| || ||||||||||| ||||| | ||||||||||||||||||||
Sbjct: 470 caattcgattggtattacagatcctgatgagcaattagagtggaatggttggttaatgct 529
Query: 432 ttacaactggttatgttcactaattttaataggttacatcgccccattcttcaaaagaag 491
||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 530 ttacaactggttatgttcattaattttgatgagttacatcgccccattcttcaaaagaag 589
Query: 492 acaattattcttgatatccttagtttcaatgacttcttgttacgttgtgtggacagcatt 551
|||||||| ||||||||||| ||||||| | | ||| ||| |||| |||||||| ||
Sbjct: 590 gcaattatttttgatatccttgacttcaatggcctgttgctacattgtctggacagcttt 649
Query: 552 gtctgcagaaaaccaaaagcgtaattttgaggataagactctagcaaatggagtcttggc 611
||||| ||||||||||| |||||||| |||||||| ||||||||||||| ||||||||
Sbjct: 650 atctgctgaaaaccaaaaacgtaatttcgaggataaatctctagcaaatggtgtcttggc 709
Query: 612 aatgatcttcttatattatctttcttacaacttcgggttcaacggtttcccaaatcttta 671
||||||||||||||||||||||||||||||||| || |||||||||| |||| || ||
Sbjct: 710 aatgatcttcttatattatctttcttacaactttggattcaacggttacccattcctcta 769
Query: 672 cacaactgaaatattaccttacactttgagaggtaaagggcttacaattttccagttagc 731
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 770 cacaactgaaattttaccttacactttgagaggtaaagggcttacaattttccagttggc 829
Query: 732 cattagtattttagttatattcaatgggtttgtcaattcaattgcaatggatgctattga 791
||||||| || |||||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 830 cattagtcttgcagttattttcaacgggtttgttaactcaattgcaatggatgctattga 889
Query: 792 at-gaaatacctacaatctttattgctgcntcttatctgttgagaattgtgtttgtaatt 850
|| |||||| ||||| ||||||| || ||||| | ||||||| | ||| ||| |||
Sbjct: 890 atggaaata-ctacatcttttattgttgtttcttagccgttgagattgttgtctgttatt 948
Query: 851 tcacttttcgttgaaacattaaggaagatctttgg 885
|||| |||||||||||| || |||||||||||||
Sbjct: 949 tcac-tttcgttgaaac-ttctggaagatctttgg 981
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9356
Number of Sequences: 1807
Number of extensions: 9356
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 3
length of query: 1060
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1044
effective length of database: 10,329,639
effective search space: 10784143116
effective search space used: 10784143116
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)