BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD04FM1.SCF screened BAC_end
(1024 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1578 0.0
>3x_Contig1571
Length = 13536
Score = 1578 bits (796), Expect = 0.0
Identities = 837/847 (98%), Gaps = 3/847 (0%)
Strand = Plus / Minus
Query: 84 cttcagcggaggaagtctcttcaacagcagatgagattgcctcttcgtcgacagcagtta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12020 cttcagcggaggaagtctcttcaacagcagatgagattgcctcttcgtcgacagcagtta 11961
Query: 144 ggattgaggcagtagtctcttcactagaggttgtctcggaagtagcaacagcggattgtt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11960 ggattgaggcagtagtctcttcactagaggttgtctcggaagtagcaacagcggattgtt 11901
Query: 204 cggtgataaccttggtgtattctacgtctcctctcgttacaatgatggtagataaatagt 263
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 11900 cggtgataaccttggtgtaaacgacgtctcctctcgttacaatgatggtagataaatagt 11841
Query: 264 aacctgaaggggcagtttcatctgcatctgggatgtcgatcgtcttagtgtagacatgtc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11840 aacctgaaggggcagtttcatctgcatctgggatgtcgatcgtcttagtgtagacatgtc 11781
Query: 324 catctacggtagcagtcacggtagtttgagcagctagggcacttgaggcagcagccaaag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11780 catctacggtagcagtcacggtagtttgagcagctagggcacttgaggcagcagccaaag 11721
Query: 384 cagtggcaactacagaggataacttcatggtaagttattcggtggtttaagcgagtgaaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11720 cagtggcaactacagaggataacttcatggtaagttattcggtggtttaagcgagtgaaa 11661
Query: 444 gggctggtttcttacgattctattaaaattataaaggatttgtagaaataggcatactac 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11660 gggctggtttcttacgattctattaaaattataaaggatttgtagaaataggcatactac 11601
Query: 504 catacagatcaagataaaattcgccaaaactttaggagagaagtgctgggtattaatact 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11600 catacagatcaagataaaattcgccaaaactttaggagagaagtgctgggtattaatact 11541
Query: 564 tgagggattcccaaactcaaacataattgaagctcctggttgggtgcagacagacatgta 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11540 tgagggattcccaaactcaaacataattgaagctcctggttgggtgcagacagacatgta 11481
Query: 624 tacttcccaatcaatattgtacaaacatactctagtgatcgaagttttcgcaaaagaggt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11480 tacttcccaatcaatattgtacaaacatactctagtgatcgaagttttcgcaaaagaggt 11421
Query: 684 gcgttttcttgatcaactcgagacatgttttgtggaatacaaacgctagtgtcgaccacc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11420 gcgttttcttgatcaactcgagacatgttttgtggaatacaaacgctagtgtcgaccacc 11361
Query: 744 ctagagagatcttttatgcaccagcgccaaagttttttttctacgaatatgtgaacttaa 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11360 ctagagagatcttttatgcaccagcgccaaagttttttttctacgaatatgtgaacttaa 11301
Query: 804 actgtcgtttctatgagagggtatggagaattctccataaatcaacagataagag-acaa 862
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 11300 actgtcgtttctatgagagggtatggagaattctccataaatcaacagaaaagagaacaa 11241
Query: 863 aagcttgcgaaataacatatacctatngaaaattagtattaggcagcgaga-atagagcc 921
|||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 11240 aagcatgcgaaataacatatacctattgaaaattagtattaggcag-gagatatagagca 11182
Query: 922 ccttcag 928
|||||||
Sbjct: 11181 ccttcag 11175
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5622
Number of Sequences: 1807
Number of extensions: 5622
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 1024
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1008
effective length of database: 10,329,639
effective search space: 10412276112
effective search space used: 10412276112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)