BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD04RM1.SCF screened BAC_end
(1025 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1727 0.0
>3x_Contig1786
Length = 33838
Score = 1727 bits (871), Expect = 0.0
Identities = 928/942 (98%), Gaps = 4/942 (0%)
Strand = Plus / Minus
Query: 49 gtgatttcggacttgccaaatctttacaagcatctatcgaatttgctaccacatatgtag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 gtgatttcggacttgccaaatctttacaagcatctatcgaatttgctaccacatatgtag 1552
Query: 109 gaactccatattatatgtctcccgaggtcctgcgagaccaaccttacagtccactaagtg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 gaactccatattatatgtctcccgaggtcctgcgagaccaaccttacagtccactaagtg 1492
Query: 169 atatatggtccctcggatgcatcctgtatgaactttgctcattacatgttcccttccaag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 atatatggtccctcggatgcatcctgtatgaactttgctcattacatgttcccttccaag 1432
Query: 229 ctaagacgtatacggagttgcaaggtaaggttaaagctggctattttgaaccattaccgc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 ctaagacgtatacggagttgcaaggtaaggttaaagctggctattttgaaccattaccgc 1372
Query: 289 atttctactccaagaacttacaagatataatcacaaggtgcatccaggttgatttcacaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 atttctactccaagaacttacaagatataatcacaaggtgcatccaggttgatttcacaa 1312
Query: 349 aaaggccgagcacttggagtttgctcaatgatattcagtgtcggatatgcaggaaagcct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 aaaggccgagcacttggagtttgctcaatgatattcagtgtcggatatgcaggaaagcct 1252
Query: 409 tagacctagaaaagtttgaaagacatttattgaattatgagcatgaattgacccaagtcg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 tagacctagaaaagtttgaaagacatttattgaattatgagcatgaattgacccaagtcg 1192
Query: 469 gtgaaatgctagaacagcatgccactgaaatgaaacgagattttgcatcagcagtagatc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 gtgaaatgctagaacagcatgccactgaaatgaaacgagattttgcatcagcagtagatc 1132
Query: 529 agcgggtgagagaaattctaaatggtacttcaaagccagcggcaactccactgataacag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 agcgggtgagagaaattctaaatggtacttcaaagccagcggcaactccactgataacag 1072
Query: 589 gtactggtcctgttaccatgccaggacgaacaccttttagaaatgcaaatgtaaatagaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 gtactggtcctgttaccatgccaggacgaacaccttttagaaatgcaaatgtaaatagaa 1012
Query: 649 actatcggtaatgatgtagttgtaacagaagaattatgtcatcaaatggtgctgcaataa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 actatcggtaatgatgtagttgtaacagaagaattatgtcatcaaatggtgctgcaataa 952
Query: 709 attacgaggaaatagtatacaaattgaacgaaagtctataaaacatgtgggtattaaatg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 attacgaggaaatagtatacaaattgaacgaaagtctataaaacatgtgggtattaaatg 892
Query: 769 ttccacttttgacctgtaatctgttcgtaggcctcgatgtattttgatctagtgcggtct 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ttccacttttgacctgtaatctgttcgtaggcctcgatgtattttgatctagtgcggtct 832
Query: 829 gcaatatcttngagcatttcaacaccgttcacacctgcaaagttgttatcagtcaaccaa 888
|||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 831 gcaatatcttgaggcatttcaacaccgtcaacacctgcaagtttgttatcagtcaaccaa 772
Query: 889 attcttaaaaaatg-ttatcgtaagaatcttgagtcttaccgacttcaaagttgttaccg 947
|||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 771 tttcttaaaaattgtttatcgtaagaatcttgagtcttaccgacttcaaagttggtaccg 712
Query: 948 ttccag-aacgagagg-atctggggtt-aaacctcgtccaca 986
|||||| ||||||||| |||||||||| ||||||||||||||
Sbjct: 711 ttccagaaacgagaggaatctggggttaaaacctcgtccaca 670
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6279
Number of Sequences: 1807
Number of extensions: 6279
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 1025
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1009
effective length of database: 10,329,639
effective search space: 10422605751
effective search space used: 10422605751
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)