BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD05FM1.SCF screened BAC_end
(1014 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1447 0.0
>3x_Contig1647
Length = 14353
Score = 1447 bits (730), Expect = 0.0
Identities = 762/770 (98%), Gaps = 2/770 (0%)
Strand = Plus / Minus
Query: 86 tctcttgttcttgttgacagatgtgaacacagagtgaacgatatctggacgaattggagc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12497 tctcttgttcttgttgacagatgtgaacacagagtgaacgatatctggacgaattggagc 12438
Query: 146 acggaaaacggctggcaatggcaaatcggtagaggtggtctcaccgttcaaagatagaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12437 acggaaaacggctggcaatggcaaatcggtagaggtggtctcaccgttcaaagatagaac 12378
Query: 206 tgcaacttgaggaatagacattactgataggtaatcaaatggacttgatgatggggaggg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12377 tgcaacttgaggaatagacattactgataggtaatcaaatggacttgatgatggggaggg 12318
Query: 266 agaaagtaaaactttgtaatgcaaaagatctaaattataccaaattaactattgttgaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12317 agaaagtaaaactttgtaatgcaaaagatctaaattataccaaattaactattgttgaaa 12258
Query: 326 agttttcttctcttgtgggcatcgaaatttttcacttttttatatctgaaaaatttcatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257 agttttcttctcttgtgggcatcgaaatttttcacttttttatatctgaaaaatttcatc 12198
Query: 386 cacgatgcactttgaaagaaatttttcttttgcgatatgggtcattgtgtacgggatgag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12197 cacgatgcactttgaaagaaatttttcttttgcgatatgggtcattgtgtacgggatgag 12138
Query: 446 ggttggttctagtcacgtgattaattgtgtggatatacgtttatattcatgtgtatatat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12137 ggttggttctagtcacgtgattaattgtgtggatatacgtttatattcatgtgtatatat 12078
Query: 506 gctcggatgcagctatcctacctgactcgatttaggatctgcttctcagagtttatcagt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12077 gctcggatgcagctatcctacctgactcgatttaggatctgcttctcagagtttatcagt 12018
Query: 566 aattctatttgttgcaagttgtaagttttaaggtctgacggcagttttgcgtacttcttg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12017 aattctatttgttgcaagttgtaagttttaaggtctgacggcagttttgcgtacttcttg 11958
Query: 626 gcagcacatatttgtttcagtaaccttttcccgtcgcctgatagtttggcttccaacagt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11957 gcagcacatatttgtttcagtaaccttttcccgtcgcctgatagtttggcttccaacagt 11898
Query: 686 ggtagtttcttggcaagtttctctacatctcctctggcgctcgaaaggttcttgtacatt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897 ggtagtttcttggcaagtttctctacatctcctctggcgctcgaaaggttcttgtacatt 11838
Query: 746 gatggagacattgtcagtaggttcaagatagctaggagcacatcattcggtttttcggag 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11837 gatggagacattgtcagtaggttcaagatagctaggagcacatcattcggttttccggag 11778
Query: 806 tgttttagttggaccgtat-cccaggcgttatttttttttgggttttctt 854
|||||||| |||| ||||| ||||||||| ||||| || |||| ||||||
Sbjct: 11777 tgttttaggtgga-cgtatccccaggcgtcattttcttctggggtttctt 11729
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8549
Number of Sequences: 1807
Number of extensions: 8549
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 1014
length of database: 10,358,551
effective HSP length: 16
effective length of query: 998
effective length of database: 10,329,639
effective search space: 10308979722
effective search space used: 10308979722
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)