BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD06FM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1015 1215 0.0
3x_Contig1806 682 0.0
3x_Contig1745 222 1e-57
>3x_Contig1015
Length = 4152
Score = 1215 bits (613), Expect = 0.0
Identities = 748/783 (95%), Gaps = 8/783 (1%)
Strand = Plus / Minus
Query: 89 tgctgctttcttgatttcctcatctgcatcaatagctttggtgacaccaacctgaagagc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3828 tgctgctttcttgatttcctcatctgcatcaatagctttggtgacaccaacctgaagagc 3769
Query: 149 accagatccgaattcactcaccaactcgcttgttggaccagaaccatattcgattctgac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3768 accagatccgaattcactcaccaactcgcttgttggaccagaaccatattcgattctgac 3709
Query: 209 tttatacgctttactctctttgtaa-gtaacagtcttggtcttttcaatggtaccggcac 267
|||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3708 tttatacgctttaccct-tttgtaaagtaacagtcttggtcttttcaatggtaccggcac 3650
Query: 268 cgaaacagaaatcaccactgacttggcccttcctctgatcaatcaataattcgtcgtcta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3649 cgaaacagaaatcaccactgacttggcccttcctctgatcaatcaataattcgtcgtcta 3590
Query: 328 agtacaaaacaccggtaccgaaaacctgcaaaccaaatatgtagtcggcatcttcttcag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3589 agtacaaaacaccggtaccgaaaacctgcaaaccaaatatgtagtcggcatcttcttcag 3530
Query: 388 gagtgaagtaaccttctaatgtgatgtaaaatattgggttagtggtgtcaattttttcat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3529 gagtgaagtaaccttctaatgtgatgtaaaatattgggttagtggtgtcaattttttcat 3470
Query: 448 gcttgaaatcgaaaagcaagttgaaagagtgtttaaaggtagcaacatggaatggagatt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3469 gcttgaaatcgaaaagcaagttgaaagagtgtttaaaggtagcaacatggaatggagatt 3410
Query: 508 catcctttgctctcttttcaacgggctcactgtagaaggaaccggtagcacctgcattgt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3409 catcctttgctctcttttcaacgggctcactgtagaaggaaccggtagcacctgcattgt 3350
Query: 568 ctccctctgctggttttgagggatcgactaccangtgctcaatt-aattagataaagtct 626
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 3349 ctccctctgctggttttgagggatcgactaccagttgctcaattaaattagataaagtct 3290
Query: 627 tatgagactctgcccc-attgtgtatggtacttctttgcccactttcttaacattccctt 685
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3289 tatgagactctgccccaattgtgtatggtacttctttgcccactttcttaacaatccctt 3230
Query: 686 cgtaaggcgaaataacatatgtagaattcacgggagcagaaccacctccaagagaatgct 745
||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||
Sbjct: 3229 cgtaaggcgaaataacatagtaagaattcacggaggcagaaccacctccagaagatgcct 3170
Query: 746 ttgcttttgcattgggaccantaacgacgattgattcttctttttttcaagtatgaatag 805
||||||| ||||| |||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct: 3169 ttgctttggcatttggaccaataacgacgattgattcttcttttttcaaaggtagaatag 3110
Query: 806 attcttcgttcttc-acagaaacatagaatc-gcagctatcttttctaagc-attcagag 862
| | ||||||||| |||||| |||||||| ||||||||| ||||||||| ||||||||
Sbjct: 3109 aattctcgttcttcaacagaacaatagaatcggcagctatc-tttctaagcaattcagag 3051
Query: 863 gtt 865
|||
Sbjct: 3050 gtt 3048
>3x_Contig1806
Length = 53694
Score = 682 bits (344), Expect = 0.0
Identities = 619/706 (87%), Gaps = 4/706 (0%)
Strand = Plus / Minus
Query: 89 tgctgctttcttgatttcctcatctgcatcaatagctttggtgacaccaacctgaagagc 148
|||||| ||||||||||||||||||||||||||||| || | ||||||||||| |||||
Sbjct: 51872 tgctgccttcttgatttcctcatctgcatcaatagcctttgcaacaccaacctggagagc 51813
Query: 149 accagatccgaattcactcaccaactcgcttgttggaccagaaccatattcgattctgac 208
||||| |||||||||||| |||| | ||| ||||| ||||| |||||||||||||||||
Sbjct: 51812 accagctccgaattcacttaccagttggctagttgggccagagccatattcgattctgac 51753
Query: 209 tttatacgctttactctctttgta-agtaacagtcttggtcttttcaatggtaccggcac 267
|||||||| ||||| || |||||| |||||||||||| ||||||||| ||||||| ||||
Sbjct: 51752 tttatacgatttaccct-tttgtagagtaacagtcttagtcttttcattggtaccagcac 51694
Query: 268 cgaaacagaaatcaccactgacttggcccttcctctgatcaatcaataattcgtcgtcta 327
|||||||||| |||||| | ||| || ||| ||||||||||||||||||| || || |
Sbjct: 51693 cgaaacagaatccaccacgggtttgacctttcttctgatcaatcaataattcttcatcca 51634
Query: 328 agtacaaaacaccggtaccgaaaacctgcaaaccaaatatgtagtcggcatcttcttcag 387
||||||| | ||| |||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct: 51633 agtacaatagaccagtaccgtaaacctgcaaaccaaatatgtagttagcatcttcctcag 51574
Query: 388 gagtgaagtaaccttctaatgtgatgtaaaatattgggttagtggtgtcaattttttcat 447
|||||||||||||||| | |||||||||||||| ||||||| | ||||||||||| ||||
Sbjct: 51573 gagtgaagtaaccttcaagtgtgatgtaaaataatgggttattcgtgtcaattttatcat 51514
Query: 448 gcttgaaatcgaaaagcaagttgaaagagtgtttaaaggtagcaacatggaatggagatt 507
| |||||||||||||| ||||||||||| || ||||| | ||||||||| ||||||||||
Sbjct: 51513 gtttgaaatcgaaaagtaagttgaaagaatgcttaaaagcagcaacatgaaatggagatt 51454
Query: 508 catcctttgctctcttttcaacgggctcactgtagaaggaaccggtagcacctgcattgt 567
|||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |
Sbjct: 51453 catcctttgctctcttttcaactggctcactgtaaaagaaaccggtagcacctgcattat 51394
Query: 568 ctccctctgctggttttgagggatcgactaccangtgctcaatt-aattagataaagtct 626
|||| |||||||||||||| ||||| ||||||| ||||||||| |||||||||| ||||
Sbjct: 51393 ctccttctgctggttttgaaggatcaactaccagttgctcaattaaattagataaggtct 51334
Query: 627 tatgagactctgcccc-attgtgtatggtacttctttgcccactttcttaacattccctt 685
|||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 51333 tatgagactctgccccaattgtatatggtacttccttgcccactttcttgacgatccctt 51274
Query: 686 cgtaaggcgaaataacatatgtagaattcacgggagcagaaccacctccaagagaatgct 745
||||||| ||||||||||| ||| |||| | ||||||||||||||| |||| ||
Sbjct: 51273 cgtaaggtgaaataacatagtaagagttcatagatgcagaaccacctccagaagaagcct 51214
Query: 746 ttgcttttgcattgggaccantaacgacgattgattcttctttttt 791
||||||| || || |||||| ||||||||| |||||||||||||||
Sbjct: 51213 ttgctttggcgtttggaccaataacgacgactgattcttctttttt 51168
>3x_Contig1745
Length = 19830
Score = 222 bits (112), Expect = 1e-57
Identities = 276/328 (84%), Gaps = 2/328 (0%)
Strand = Plus / Plus
Query: 89 tgctgctttcttgatttcctcatctgcatcaatagctttggtgacaccaacctgaagagc 148
|||||| ||| ||||||| ||||||||||||||||| |||| |||||||| |||| | |
Sbjct: 235 tgctgccttcctgatttcttcatctgcatcaatagccttggcaacaccaacttgaaaacc 294
Query: 149 accagatccgaattcactcaccaactcgcttgttggaccagaaccatattcgattctgac 208
|||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 295 gccagatccaaattcactcaccaactcacttgttggaccagaaccgtattcgattctaac 354
Query: 209 tttatacgctttactctctttgta-agtaacagtcttggtcttttcaatggtaccggcac 267
|||||||||||||| || |||| | | | |||||||||||||||||| |||||| ||||
Sbjct: 355 tttatacgctttaccct-tttgcagactgacagtcttggtcttttcatcggtaccagcac 413
Query: 268 cgaaacagaaatcaccactgacttggcccttcctctgatcaatcaataattcgtcgtcta 327
|||| |||||| |||| |||| | ||| ||||||||| || |||||| || || |
Sbjct: 414 cgaagcagaaacttccacgagtttggtctttcttctgatcaaccactaattcatcatcca 473
Query: 328 agtacaaaacaccggtaccgaaaacctgcaaaccaaatatgtagtcggcatcttcttcag 387
||||||| | ||||| ||| ||||||| ||||| |||| ||||| ||||||||||| ||
Sbjct: 474 agtacaatatgccggtgccgtaaacctgtaaaccgaataggtagttggcatcttctttag 533
Query: 388 gagtgaagtaaccttctaatgtgatgta 415
|||| ||||||||||| | |||||||||
Sbjct: 534 gagtaaagtaaccttccagtgtgatgta 561
Score = 105 bits (53), Expect = 2e-22
Identities = 129/152 (84%), Gaps = 2/152 (1%)
Strand = Plus / Plus
Query: 555 gcacctgcattgtctccctctgctggttttgagggatcgactaccangtgctcaattaa- 613
|||||| |||| ||||| |||||||||||||| ||||| ||||||| || ||||| ||
Sbjct: 701 gcacctacattatctccttctgctggttttgaaggatctactaccagttgttcaatcaaa 760
Query: 614 ttagataaagtcttatgagactctgccccat-tgtgtatggtacttctttgcccactttc 672
|| ||||| ||||||||||| ||||||||| ||| ||||| ||||| ||||| |||||
Sbjct: 761 tttgataaggtcttatgagattctgccccaagtgtatatggaacttccttgccgactttg 820
Query: 673 ttaacattcccttcgtaaggcgaaataacata 704
|||||| |||||||||| || |||||||||||
Sbjct: 821 ttaacaatcccttcgtatggtgaaataacata 852
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7132
Number of Sequences: 1807
Number of extensions: 7132
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 3
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)