BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD06RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1100 0.0
>3x_Contig1173
Length = 7454
Score = 1100 bits (555), Expect = 0.0
Identities = 653/670 (97%), Gaps = 13/670 (1%)
Strand = Plus / Plus
Query: 44 cttgaatgaaaaaaaaaaacaaggtcatgtgattataaagtggtataggattaaataata 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4050 cttgaatgaaaaaaaaaaacaaggtcatgtgattataaagtggtataggattaaataata 4109
Query: 104 cacttccacggtatatatatggaggagattgctaactactgcttgagtagaagcggctgt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4110 cacttccacggtatatatatggaggagattgctaactactgcttgagtagaagcggctgt 4169
Query: 164 actggagcttttgaaaagaatcagaagtcaaagttcaatactattttgtgaggaacatca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4170 actggagcttttgaaaagaatcagaagtcaaagttcaatactattttgtgaggaacatca 4229
Query: 224 tcttccggttctcctaaatcccgctttagagactgtatccgaaggtattcttcttgtgac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4230 tcttccggttctcctaaatcccgctttagagactgtatccgaaggtattcttcttgtgac 4289
Query: 284 agtttttcaatgaccatagcctggtactgttctttcaaaccaggaaggtatacgaagcct 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290 agtttttcaatgaccatagcctggtactgttctttcaaaccaggaaggtatacgaagcct 4349
Query: 344 tcatcggtttcatcttgcggtgtacataaccaggtctgtatgaagtccttccccgcggct 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4350 tcatcggtttcatcttgcggtgtacataaccaggtctgtatgaagtccttccccgcggct 4409
Query: 404 ttgaaaggtaaattaagaatgttcaagtcatatacaatgcatggccagtttttctcttct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4410 ttgaaaggtaaattaagaatgttcaagtcatatacaatgcatggccagtttttctcttct 4469
Query: 464 tttatcttcttctgagttgaaagttcttgggcatacatgtaagcagcatttct-ttgaaa 522
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 4470 tttatcttcttctgagttgaaagttcttgggcatacatgtaagcagcaattctcttgaaa 4529
Query: 523 t-aacgctcttgaaaa-ccattgccgataac-atcatgacaaaatagcttttgatcatta 579
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 4530 tgaacgctcttgaaaacccattgccgataactatcatgacaaaatagcttttgatca-ta 4588
Query: 580 tcc--aatagtaggatccatttatgg-agaaagtcgcctgaatcttgagtgtgaag-tgg 635
||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| |||
Sbjct: 4589 tcccaaatagtaggatccagttatggaagaaagtcgcctgaatcttgagtgtgaagttgg 4648
Query: 636 aacttgg-aatgggaatattcagattttcc-ccaatacccgtaat-ggaagattttt-tt 691
| | ||| |||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 4649 agcatggaaatgggaatattcagattttccgccaatacccgtaatcggaagatttttctt 4708
Query: 692 agagtctatc 701
||||||||||
Sbjct: 4709 agagtctatc 4718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,690
Number of Sequences: 1807
Number of extensions: 14690
Number of successful extensions: 132
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)