BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD07FM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1246 850 0.0
>3x_Contig1246
Length = 5473
Score = 850 bits (429), Expect = 0.0
Identities = 493/513 (96%), Gaps = 1/513 (0%)
Strand = Plus / Minus
Query: 86 cacctctttcaccaccgatttcatacccgaggcaaaaaatctcaagagaagtacaggtta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 cacctctttcaccaccgatttcatacccgaggcaaaaaatctcaagagaagtacaggtta 1190
Query: 146 tgatgtaatactagatttatttgatgccaacaattcgatggttacccattctgcagacga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 tgatgtaatactagatttatttgatgccaacaattcgatggttacccattctgcagacga 1130
Query: 206 tcctgtgtatatcgccatatactctctattacagggatcggtagaacaatcagatattac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 tcctgtgtatatcgccatatactctctattacagggatcggtagaacaatcagatattac 1070
Query: 266 cagaggtatcttaaagactcaaaaaagagttcaatttgccccatggtcgaaaagctcact 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 cagaggtatcttaaagactcaaaaaagagttcaatttgccccatggtcgaaaagctcact 1010
Query: 326 acacgtcaacattggtaaaaaatcgccatacaacaaaacttctaactccgactatgtgag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 acacgtcaacattggtaaaaaatcgccatacaacaaaacttctaactccgactatgtgag 950
Query: 386 cgggctcatactttcgaataccacggcagtgaattcacttcttaagaaaacatgcaatag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 cgggctcatactttcgaataccacggcagtgaattcacttcttaagaaaacatgcaatag 890
Query: 446 tttcgatacgatttttaacagaggtgctttcttacacaagtttcaaattgggagagtgtt 505
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 889 tttcgatacgattttcaacagaggtgctttcttacacaagtttcaaaatgggagagtgtt 830
Query: 506 tgaaaaattttgggattaatttaaaggaagttggggaagcgtccaatgggtatttgacga 565
|||||| ||||||| ||||||||| |||| | | | ||| |||| |||| |||||||
Sbjct: 829 tgaaaatggttgggatgaatttaaagaaagtcgtgaagtcgtacaatcggtaattgacga 770
Query: 566 atacccat-tgctggttaggattcataccttga 597
|||| ||| ||||| | ||||||||||| ||||
Sbjct: 769 atacacatatgctgctcaggattcatacattga 737
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,473
Number of Sequences: 1807
Number of extensions: 20473
Number of successful extensions: 2619
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)