BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD07RM1.SCF screened BAC_end
(1005 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1444 1070 0.0
>3x_Contig1444
Length = 7580
Score = 1070 bits (540), Expect = 0.0
Identities = 675/702 (96%), Gaps = 15/702 (2%)
Strand = Plus / Plus
Query: 47 atgggaagat-aagaagat-aaattacaacgccctgtcaaaagatcttctattggtgcat 104
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3851 atgggaagattaagaagattaaattacaacgccctgtcaaaagatcttctattggtgcat 3910
Query: 105 ctaacgactctgaacttgatactgcagttgttaccaaaaaaacacgtactgaagatactg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3911 ctaacgactctgaacttgatactgcagttgttaccaaaaaaacacgtactgaagatactg 3970
Query: 165 cagcacaaccaattcctttgtttggtataaataagacaccagaaacaaagacatttaaga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3971 cagcacaaccaattcctttgtttggtataaataagacaccagaaacaaagacatttaaga 4030
Query: 225 gaatgaagcactacttgacaagaaaactaaatggcactcttgggtttaaggaaactaaga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4031 gaatgaagcactacttgacaagaaaactaaatggcactcttgggtttaaggaaactaaga 4090
Query: 285 tacccgactttttggaaaacacttcaactcaagttgacaagcttcttcgacaatgcatca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4091 tacccgactttttggaaaacacttcaactcaagttgacaagcttcttcgacaatgcatca 4150
Query: 345 ttcaaaaagaaagtcattcggccatactcatcggtcctcgatccaattataaagatatga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4151 ttcaaaaagaaagtcattcggccatactcatcggtcctcgatccaattataaagatatga 4210
Query: 405 taataaagcatcatttggaggctttaagatatgacacacaacgaacaattcattgttatc 464
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4211 taataaagcatcatttggaggctttaagat-cgacacacaacgaacaattcattgttatc 4269
Query: 465 aacttaaatggctctttacattcggaaaactctgc-attaacagtattgctgaacaatta 523
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4270 aacttaaatggctctttacattcggaaaactctgcaattaacagtattgctgaacaatta 4329
Query: 524 gaattcgaacttgcaaacagaaacgtttattcatcataaaaagttaaagcagaag-attt 582
||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||
Sbjct: 4330 gaattcgaacttgcaaacagaaacgttaattcatcaaaaaaagttaaagcagaagaatta 4389
Query: 583 ngtttatctgaa-gtactttgacagaagtctttgat-acattctaagattg-tggactta 639
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 4390 ggtttatctgaaggtactttgacagaagtctttgataacattctaagattgttggactca 4449
Query: 640 tttactgtgacttctcttaagggtgtacact-acagaa--gaaaattagagc-cggtacg 695
|||||||||||| |||| ||||||||||||| |||||| ||||| ||||| || |||
Sbjct: 4450 tttactgtgactcctctaaagggtgtacactcacagaaagaaaaatcagagcacgtaacg 4509
Query: 696 ctag-gttcatatttga-gaaattgac-aatttgctggacca 734
|||| |||||||||||| ||||||||| ||||||||||||||
Sbjct: 4510 ctagtgttcatatttgatgaaattgacaaatttgctggacca 4551
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9726
Number of Sequences: 1807
Number of extensions: 9726
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 1005
length of database: 10,358,551
effective HSP length: 16
effective length of query: 989
effective length of database: 10,329,639
effective search space: 10216012971
effective search space used: 10216012971
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)