BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD08FM1.SCF screened BAC_end
(1025 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1269 0.0
>3x_Contig1770
Length = 29267
Score = 1269 bits (640), Expect = 0.0
Identities = 741/767 (96%), Gaps = 6/767 (0%)
Strand = Plus / Minus
Query: 86 tgcagaaaacttggagaagctaacaaacacacatacacttccgtctgtattattnttctg 145
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 12196 tgcagaaaacttggagaagctaacaaacacacatacacttccgtctgtattatt-ttctg 12138
Query: 146 atccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12137 atccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgt 12078
Query: 206 tttcagcctataactcttttgtttatgtcggtttaaacaagaaggagaaggaaagaaaaa 265
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 12077 tttcagcctataactctttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaa 12018
Query: 266 gactgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12017 gactgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgatt 11958
Query: 326 tgatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11957 tgatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagg 11898
Query: 386 aaacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagacta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897 aaacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagacta 11838
Query: 446 ttgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagataacg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 11837 ttgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacg 11778
Query: 506 gacatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11777 gacatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaat 11718
Query: 566 tggtgaagcctgattgtcc-attatagattatttgaccaagtacagcggaataaccgaag 624
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11717 tggtgaagcctgatgttccaattatagattatttgaccaagtacagcggaataaccgaag 11658
Query: 625 -aatactacgcgacgttactactacattgaaggatgtacaggangatcttctcaatatca 683
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 11657 aaaaactacgcgacgttactactacattgaaggatgtacaggaggatcttctcaatatca 11598
Query: 684 ttagctcaaaggatgtattaatttggacattcgttgcagtcggacccttacgttttaaag 743
||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct: 11597 ttagctcaaaggatgtattaa-ttggacattcgttgcagtcggaccttaacgttttaaag 11539
Query: 744 ctaagacatccccatatcgttgacaccgcatgtatttaccaacacaaagcaggtcctcca 803
|||||||||||| ||||||||||||| ||| ||||||| | ||||||||||||||||||
Sbjct: 11538 ctaagacatcccaatatcgttgacacggcagttatttacgagcacaaagcaggtcctcca 11479
Query: 804 ttcagacca-cccttaggta-ttggccctggcatatttgaaggttga 848
||||||||| |||| ||||| |||||| || ||||||||| |||||
Sbjct: 11478 ttcagaccagccctaaggtatttggcctcggaatatttgaatgttga 11432
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7979
Number of Sequences: 1807
Number of extensions: 7979
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 1025
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1009
effective length of database: 10,329,639
effective search space: 10422605751
effective search space used: 10422605751
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)