BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD08RM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 1316 0.0
>3x_Contig1607
Length = 10159
Score = 1316 bits (664), Expect = 0.0
Identities = 714/727 (98%), Gaps = 3/727 (0%)
Strand = Plus / Minus
Query: 44 ctttaaaccggtattcagaataataaaggaaacagtaagtaatggcagttatttcagtgc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6495 ctttaaaccggtattcagaataataaaggaaacagtaagtaatggcagttatttcagtgc 6436
Query: 104 gtgggcttgatgccgtcgtgtctaaggatgaatcgttgggggaggaagttgtagagggga 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6435 gtgggcttgatgccgtcgtgtctaaggatgaatcgttgggggaggaagttgtagagggga 6376
Query: 164 atattgatgcttgtaaggaatcagtgaggtctcatgagcatgatgacaatgccagttacg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6375 atattgatgcttgtaaggaatcagtgaggtctcatgagcatgatgacaatgccagttacg 6316
Query: 224 atgaaccaccaagcttgactcatccgatggagtcacgtgttgtgaggaaaatggatttat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6315 atgaaccaccaagcttgactcatccgatggagtcacgtgttgtgaggaaaatggatttat 6256
Query: 284 acttggttcccttgatgtgtatgctatatttcttgtccaatttggataagtctaacattg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6255 acttggttcccttgatgtgtatgctatatttcttgtccaatttggataagtctaacattg 6196
Query: 344 gtaacgctgaagtcgctggtctctctgagtctttgaatttaacaggtaaccagtacggta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6195 gtaacgctgaagtcgctggtctctctgagtctttgaatttaacaggtaaccagtacggta 6136
Query: 404 actgtgtgactgtgttctatgcgacgtatatcttctttgatccaattggtgctaacttgt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6135 actgtgtgactgtgttctatgcgacgtatatcttctttgatccaattggtgctaacttgt 6076
Query: 464 tgaaaattattgggcccaagtatatgatgaccggatgtttgatttgctttggtgccattt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6075 tgaaaattattgggcccaagtatatgatgaccggatgtttgatttgctttggtgccattt 6016
Query: 524 ctttggggacagcttgggtaaaagattatggacatttactcttggttagagttctattgn 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6015 ctttggggacagcttgggtaaaagattatggacatttactcttggttagagttctattgg 5956
Query: 584 gagcatttgatgccaccatttatccatcaattaacatgtatttgtcattctgctatcgtc 643
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5955 gagcatttgaggccaccatttatccatcaattaacatgtatttgtcaatctgctatcgtc 5896
Query: 644 gtgaacagtatgcgattagatttgcatgggtttttctttgctgcatgtatatcttccttg 703
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct: 5895 gtgaacagtatgcgattagattcgcatggg-ttttctttgctgcatgtatatcttcctcg 5837
Query: 704 tttggggggttgatttcgtacgggttgttcaaagatt-atggttcttttaatgcctggca 762
||||| |||||||| |||||| ||||||||||||||| |||||||||| ||||| |||||
Sbjct: 5836 tttggtgggttgatctcgtac-ggttgttcaaagattaatggttctttgaatgcttggca 5778
Query: 763 atccatt 769
|| ||||
Sbjct: 5777 atacatt 5771
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7911
Number of Sequences: 1807
Number of extensions: 7911
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)