BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD09RM1.SCF screened BAC_end
(1022 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig429 1179 0.0
>3x_Contig429
Length = 1524
Score = 1179 bits (595), Expect = 0.0
Identities = 602/603 (99%), Gaps = 1/603 (0%)
Strand = Plus / Minus
Query: 38 aagcttattgccgagtttgggaagaagggtaaaccaactccttcccaatctactacttcc 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aagcttattgccgagtttgggaagaagggtaaaccaactccttcccaatctactacttcc 544
Query: 98 ttggcaaaattagcgtcggaaggaattgaatcttattcagactcaaagatctctgaaatt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttggcaaaattagcgtcggaaggaattgaatcttattcagactcaaagatctctgaaatt 484
Query: 158 accgtagatataaatcagttggacaccgaaaacttatctgaagctgaagacctaaaatct 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 accgtagatataaatcagttggacaccgaaaacttatctgaagctgaagacctaaaatct 424
Query: 218 ctaagaagagcttctttggcaaccttaggctcaattggttttgatgacaatgaaaatagc 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctaagaagagcttctttggcaaccttaggctcaattggttttgatgacaatgaaaatagc 364
Query: 278 gccagaagagaacacagggaacaaggtaaagtcaaatgggatatttatatggagtacgcc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gccagaagagaacacagggaacaaggtaaagtcaaatgggatatttatatggagtacgcc 304
Query: 338 cgtgcgtgtaacccccgcaacgtgtgtgtgtttttgggtttcctaatcctctcgatgctg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cgtgcgtgtaacccccgcaacgtgtgtgtgtttttgggtttcctaatcctctcgatgctg 244
Query: 398 ttggccgtcattggtaatttctggctcaaacactggtcagaagtcaatactgagaaaggc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttggccgtcattggtaatttctggctcaaacactggtcagaagtcaatactgagaaaggc 184
Query: 458 tataacccccatgccacaagatatttgatgatttacttagctttaggtgttggttccgct 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tataacccccatgccacaagatatttgatgatttacttagctttaggtgttggttccgct 124
Query: 518 ctggcaacattaatacagactattgttctatgggtattctgtactatccatggctccaag 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctggcaacattaatacagactattgttctatgggtattctgtactatccatggctccaag 64
Query: 578 tatttacatgatgcaatggcttcaagtgtttt-aaggcacctatgtctttctttgaaaca 636
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 63 tatttacatgatgcaatggcttcaagtgttttaaaggcacctatgtctttctttgaaaca 4
Query: 637 act 639
|||
Sbjct: 3 act 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7446
Number of Sequences: 1807
Number of extensions: 7446
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 1022
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1006
effective length of database: 10,329,639
effective search space: 10391616834
effective search space used: 10391616834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)