BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD10FM1.SCF screened BAC_end
(1011 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1664 1417 0.0
>3x_Contig1664
Length = 15696
Score = 1417 bits (715), Expect = 0.0
Identities = 750/759 (98%), Gaps = 2/759 (0%)
Strand = Plus / Minus
Query: 87 gcaaaatttacaatcaagaataagggcgagtagcaagaacccgatgatatataggagtaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13794 gcaaaatttacaatcaagaataagggcgagtagcaagaacccgatgatatataggagtaa 13735
Query: 147 gcttctaaggtataggaaaacctatttgcagaatttcatcagacaaagggtctgaggaag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13734 gcttctaaggtataggaaaacctatttgcagaatttcatcagacaaagggtctgaggaag 13675
Query: 207 gaatctgtaactgatccttccacaacagtactgtttacaatacgcagctattcatgtgtg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13674 gaatctgtaactgatccttccacaacagtactgtttacaatacgcagctattcatgtgtg 13615
Query: 267 aaccggttgtgggtgtttagaaaaaaaaaaaaagaacactacatacatcgctgcctgttc 326
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 13614 aaccggttgtgggtgtttagaaaaaagaaaaaagaacactacatacatcgctgcctgttc 13555
Query: 327 ttcttgttctgcgttacttataataataataggtcattctctacaaagttccttcgtgtc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13554 ttcttgttctgcgttacttataataataataggtcattctctacaaagttccttcgtgtc 13495
Query: 387 tgtgcaataaatcacatcaacatataaatactatagtcattacttaaccgtaaaggtgcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13494 tgtgcaataaatcacatcaacatataaatactatagtcattacttaaccgtaaaggtgcg 13435
Query: 447 gaaaatatgtatgatgaagtaatgagtaagatgagatgcatttccgaaacgaaggaatgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13434 gaaaatatgtatgatgaagtaatgagtaagatgagatgcatttccgaaacgaaggaatgg 13375
Query: 507 acacggcaatttcgtgctgggatggaacaggttttcatgattccaatcatttcttgtcgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13374 acacggcaatttcgtgctgggatggaacaggttttcatgattccaatcatttcttgtcgc 13315
Query: 567 acccttttactcgcaattcttgactcttgtaaatcttgagcagtctcacaacagcggaat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13314 acccttttactcgcaattcttgactcttgtaaatcttgagcagtctcacaacagcggaat 13255
Query: 627 aacgttgctctggcgggaataaatggataaaaaggatttaagctgccggacagtgaaccc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13254 aacgttgctctggcgggaataaatggataaaaaggatttaagctgccggacagtgaaccc 13195
Query: 687 aatcgtcaaaccaagaaaagaaagggaaaaatcgctttacttacgagatgctacagctat 746
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13194 aatcgtcaaaccaagaaaagaaa-ggaaaaatcgctttacttacgagatgctacagctat 13136
Query: 747 ccatccctcat-ttattagaaaagagcacgcagtttatcaatcgaatgtatattcgtcct 805
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 13135 ccatccctcatctcattagaaaagagcacgcagtttatcaatcgaatgtatattcgttct 13076
Query: 806 aatcggattggaggtggtcttgttgtaatgcgcaacatt 844
|||||||||| ||||| |||||||||| ||||||||||
Sbjct: 13075 aatcggattgaaggtgttcttgttgtatagcgcaacatt 13037
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,284
Number of Sequences: 1807
Number of extensions: 14284
Number of successful extensions: 224
Number of sequences better than 1.0e-20: 1
length of query: 1011
length of database: 10,358,551
effective HSP length: 16
effective length of query: 995
effective length of database: 10,329,639
effective search space: 10277990805
effective search space used: 10277990805
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)