BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD11FM1.SCF screened BAC_end
(1057 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1320 1378 0.0
>3x_Contig1320
Length = 7350
Score = 1378 bits (695), Expect = 0.0
Identities = 733/743 (98%), Gaps = 2/743 (0%)
Strand = Plus / Minus
Query: 87 tatcgaacgtcagatatttccaaacctctcctatatcgagaaaaatgccacttccacctg 146
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825 tatcgaacgttagatatttccaaacctctcctatatcgagaaaaatgccacttccacctg 4766
Query: 147 ttcttgaatcacgtcgtcccaaagaatctccggaattcgactattctacactttccaatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4765 ttcttgaatcacgtcgtcccaaagaatctccggaattcgactattctacactttccaatt 4706
Query: 207 acaagtctttcaaggtatatt-ttcacagttggatgttagcgttgatttcaaaaagaaaa 265
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 acaagtctttcaaggtaaagcattcacagttggatgttagcgttgatttcaaaaagaaaa 4646
Query: 266 ccattagtggttctgtctcttacgagattgaaaaggtgaagaaggatgaaaacactatca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4645 ccattagtggttctgtctcttacgagattgaaaaggtgaagaaggatgaaaacactatca 4586
Query: 326 agttggatacttcttacttgaagatctctaaagtcaaagtggatgatgaagacgacgtga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 agttggatacttcttacttgaagatctctaaagtcaaagtggatgatgaagacgacgtga 4526
Query: 386 agtttaaattgttagaaagaaaacatccattgggtgctcagttaattgttagtccatctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 agtttaaattgttagaaagaaaacatccattgggtgctcagttaattgttagtccatctt 4466
Query: 446 ctttgccggaaatattccatttgtgcttacaattttcgacaactgcagactgtacagcat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 ctttgccggaaatattccatttgtgcttacaattttcgacaactgcagactgtacagcat 4406
Query: 506 tgcaatggcttgatgaacaccaaacatctgggaaaccgtacgttttctctcaattggaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 tgcaatggcttgatgaacaccaaacatctgggaaaccgtacgttttctctcaattggaag 4346
Query: 566 ccatccatgcgagaagtctattcacatgttttgataccccaagtgtaaaatctacatatc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 ccatccatgcgagaagtctattcacatgttttgataccccaagtgtaaaatctacatatc 4286
Query: 626 tcgccaacatcaagtctgaattaccagttgtgttttcgggtatccaaacaggttacgatg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 tcgccaacatcaagtctgaattaccagttgtgttttcgggtatccaaacaggttacgatg 4226
Query: 686 attctactaaggtctactctttcaagcaagaagtaccaattccagcatatttgatcggta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 attctactaaggtctactctttcaagcaagaagtaccaattccagcatatttgatcggta 4166
Query: 746 tcgcatcaggtgatttggccagcgctgatattggtcctcgctccaaagtttacgtcgaaa 805
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct: 4165 tcgcatcaggtgatttggccagcgctgatattggtcctcgttccaaagtttacgt-ggaa 4107
Query: 806 ccttattgtttaaaggaccccca 828
|||||| ||||||||||| ||||
Sbjct: 4106 ccttatcgtttaaaggacgccca 4084
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7484
Number of Sequences: 1807
Number of extensions: 7484
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 1057
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1041
effective length of database: 10,329,639
effective search space: 10753154199
effective search space used: 10753154199
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)