BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD11RM1.SCF screened BAC_end
(1029 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1394 1731 0.0
>3x_Contig1394
Length = 5721
Score = 1731 bits (873), Expect = 0.0
Identities = 895/901 (99%), Gaps = 1/901 (0%)
Strand = Plus / Minus
Query: 45 cttatcgacattctactctaagcattgtcccttacgaataccgtaaaagataatctaatt 104
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4915 cttatcgacattctactctaagcatagtcccttacgaataccgtaaaagataatctaatt 4856
Query: 105 catagagagcacaaaaacatatcaatatgagtgagacaaaatatgctttggtcactggtg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4855 catagagagcacaaaaacatatcaatatgagtgagacaaaatatgctttggtcactggtg 4796
Query: 165 catcatcagggattggttatgaagtcacaaaggagttattgaggagagggtggtacgttt 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4795 catcatcagggattggttatgaagtcacaaaggagttattgaggagagggtggtacgtgt 4736
Query: 225 tctcatgtgccagaagaacacatcctatggaggaattaagagccgagtttggagatagat 284
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4735 acgcatgtgccagaagaacacatcctatggaggaattaagagccgagtttggagatagat 4676
Query: 285 gcatccctaggaaacttgatgtttcgaatcagaatgatatcacccagttgaagttgaagt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4675 gcatccctaggaaacttgatgtttcgaatcagaatgatatcacccagttgaagttgaagt 4616
Query: 345 tggagcaagaattaccagatcagaagctacatctattatataataacgctggccaaagct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4615 tggagcaagaattaccagatcagaagctacatctattatataataacgctggccaaagct 4556
Query: 405 gctctctgcccgcaatagacgtgagcgaagaaatcatcgataatacattcagagtaaacg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4555 gctctctgcccgcaatagacgtgagcgaagaaatcatcgataatacattcagagtaaacg 4496
Query: 465 tttatggacccatcaactcatgtcgtgaattcgcaccattaatcataaacgctaagggga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4495 tttatggacccatcaactcatgtcgtgaattcgcaccattaatcataaacgctaagggga 4436
Query: 525 caatcgtcttcactgggtcattagctgggatatgtccatttccgtttggagcagtgtaca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4435 caatcgtcttcactgggtcattagctgggatatgtccatttccgtttggagcagtgtaca 4376
Query: 585 gcgcatcaaaggctgcgattcatcaatacgctcgggtgttacacggagaattaggtcctt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4375 gcgcatcaaaggctgcgattcatcaatacgctcgggtgttacacggagaattaggtcctt 4316
Query: 645 tgggcgtacgtgtcattaacatgattacaggaggtgtagccacagacatcgctgataaga 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4315 tgggcgtacgtgtcattaacatgattacaggaggtgtagccacagacatcgctgataaga 4256
Query: 705 agacattaccagaaggtagtatcttcaacttcccggagggtatcaaagccgttgaaaccc 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4255 agacattaccagaaggtagtatcttcaacttcccggagggtatcaaagccgttgaaaccc 4196
Query: 765 gtaagaagatgtcagagaagaatcaaccgatgtcaccagctgattacgcaagagaaacgg 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4195 gtaagaagatgtcagagaagaatcaaccgatgtcaccagctgattacgcaagagaaacgg 4136
Query: 825 tgaatgatatcgaaaacggcagcattgaccccggtggatatataccgggggacgatggcc 884
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 4135 tgaatgatatcgaaaacggcagcattga-cccggtggatatataccggggaacgatggcc 4077
Query: 885 acggtagtgaaatggttaatgctactgattccatacgcattgctagaatggggattacgc 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4076 acggtagtgaaatggttaatgctactgattccatacgcattgctagaatggggattacgc 4017
Query: 945 a 945
|
Sbjct: 4016 a 4016
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5983
Number of Sequences: 1807
Number of extensions: 5983
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 1029
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1013
effective length of database: 10,329,639
effective search space: 10463924307
effective search space used: 10463924307
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)