BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZD12FM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig643 1017 0.0
>3x_Contig643
Length = 2667
Score = 1017 bits (513), Expect = 0.0
Identities = 593/622 (95%), Gaps = 1/622 (0%)
Strand = Plus / Minus
Query: 146 ggaaggagcnngacnagaccncnccaaccgttttcctcgattatgttcacaatacccata 205
|||| |||| ||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 2197 ggaatgagcttgactagacctctccaaccgttttcctcgattatgttcacaatacccata 2138
Query: 206 ttttcagnaactatctttgttgatttgccanggancgngtatataccaatttgggaaaca 265
||||||| ||||||| | | || |||| ||| || ||| ||||||||||||||||||
Sbjct: 2137 ttttcagtaactatcctgttcgagaggccatggatcgtgtaaataccaatttgggaaaca 2078
Query: 266 atgtcatcaacttcatggtcagtgtacggtttatcgcttaattcctgaaagacgcctaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2077 atgtcatcaacttcatggtcagtgtacggtttatcgcttaattcctgaaagacgcctaga 2018
Query: 326 agattatctgtaatattatcaactgctttattagtcaaagatagaataataatttcacgg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2017 agattatctgtaatattatcaactgctttattagtcaaagatagaataataatttcacgg 1958
Query: 386 ggtttcacctgccccgtttggatcaactctcgaactttgcatagcaatgtatatgtctta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1957 ggtttcacctgccccgtttggatcaactctcgaactttgcatagcaatgtatatgtctta 1898
Query: 446 cctgaaccgggtcctgcaataactttcagagtgctagcaggtatataagggaattggata 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1897 cctgaaccgggtcctgcaataactttcagagtgctagcaggtatataagggaattggata 1838
Query: 506 atttcattctgcgaatcagntggccttttcatcatacgattgaccacagactacactcta 565
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1837 atttcattctgcgaatcagttggccttttcatcatacgattgaccacagactacactcta 1778
Query: 566 tgttgagtggatcagcccaatggatttcctcgtcactcgacgttcatatagctattctgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1777 tgttgagtggatcagcccaatggatttcctcgtcactcgacgttcatatagctattctgt 1718
Query: 626 ttcggtcatctcaaattagcatatatatggaaccgaaaataaaggagaaactgggtatgt 685
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1717 ttcggtcatctcaaattagcatatatatggaaccgaaaataaagtagaaactgtttatgt 1658
Query: 686 cgattgacggttttaaaataaacgagaaacggcacaactaaaaaaatcgaagattg-atg 744
||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1657 ttattgacgtttttaaaataaacgagaaacggcacaactaaataaatcgaagattgaatg 1598
Query: 745 tgttatccgnaacgagatactg 766
|||||| || ||||||||||||
Sbjct: 1597 tgttattcgtaacgagatactg 1576
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4916
Number of Sequences: 1807
Number of extensions: 4916
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)