BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE03FM1.SCF screened BAC_end
(1002 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1049 1086 0.0
>3x_Contig1049
Length = 4107
Score = 1086 bits (548), Expect = 0.0
Identities = 647/671 (96%), Gaps = 8/671 (1%)
Strand = Plus / Plus
Query: 86 tttggatcgaatgtggtaagcatcagttcactttccaacgttaatcgaggttcctttatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307 tttggatcgaatgtggtaagcatcagttcactttccaacgttaatcgaggttcctttatt 3366
Query: 146 tttgtatctaaggtggtcatatgaatctattattagttgaaatatttcaaagtcagttca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3367 tttgtatctaaggtggtcatatgaatctattattagttgaaatatttcaaagtcagttca 3426
Query: 206 aatgactgtcacgtgagatattgatctattttagtttcgcagcacgatggatgccaccgt 265
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 3427 aatgactgtcacgtgagagaatgatctattttagtttcgcagcacgatggatgccaccgt 3486
Query: 266 gaacctccacgcatacactgaaagcaactcggaagttaataagccactatcgatccaata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3487 gaacctccacgcatacactgaaagcaactcggaagttaataagccactatcgatccaata 3546
Query: 326 gattcatcaacaggtttgttctcgagagctttttcgcgtttgtgtttgttcgagttttca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3547 gattcatcaacaggtttgttctcgagagctttttcgcgtttgtgtttgttcgagttttca 3606
Query: 386 aatttgacacaaaatattcaataaagacgtcagttttatcaatatcgtaatcactaagga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3607 aatttgacacaaaatattcaataaagacgtcagttttatcaatatcgtaatcactaagga 3666
Query: 446 tgtctgtccaaaaacaaaacggcttgaacctgaaactaaacttatgaatagccaatagtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3667 tgtctgtccaaaaacaaaacggcttgaacctgaaactaaacttatgaatagccaatagtt 3726
Query: 506 cagagtaatttcaaccaagtcatcaactatacaatgagtaaacccaggcttgg-aatccg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3727 cagagtaatttcaaccaagtcatcaactatacaatgagtaaacccaggcttggaaatccg 3786
Query: 565 aattagttgccacatgctctttgggcgcagtttctagatgaaaattcgagcacaacgaca 624
||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 3787 aataagttgccacatgctcttgggcggcagtttctagatgaaaattcgagcacaacgaca 3846
Query: 625 gatagccgaaaaagagagtcttgacttc-cagctttgatgaggaggttgaaagaaccca- 682
||||| ||||||||||||| |||||||| |||| ||||||| ||||||||||||| |||
Sbjct: 3847 gatag-cgaaaaagagagttttgacttcacagcattgatgaagaggttgaaagaaaccag 3905
Query: 683 gaagactacattgccagaaagaatt--ccaggaaaatttgttggccccta-tcaacatga 739
|||||||||| ||||| ||||| | | ||||||||||||||||| ||| |||||||||
Sbjct: 3906 gaagactacaatgccaagaagaaataccaaggaaaatttgttggccactactcaacatga 3965
Query: 740 -ttgaatgagt 749
||||||||||
Sbjct: 3966 tttgaatgagt 3976
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7908
Number of Sequences: 1807
Number of extensions: 7908
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 1002
length of database: 10,358,551
effective HSP length: 16
effective length of query: 986
effective length of database: 10,329,639
effective search space: 10185024054
effective search space used: 10185024054
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)