BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE03RM1.SCF screened BAC_end
(1034 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1007 0.0
>3x_Contig1791
Length = 39945
Score = 1007 bits (508), Expect = 0.0
Identities = 542/552 (98%), Gaps = 1/552 (0%)
Strand = Plus / Minus
Query: 48 caagagtttaacgtatatatcaagtctttcgttttgatatgagaccatttctattctttt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20127 caagagtttaacgtatatatcaagtctttcgttttgatatgagaccatttctattctttt 20068
Query: 108 tattataccattgacatgatcgattaagtttgatctagtctttgttgataagggtaccgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20067 tattataccattgacatgatcgattaagtttgatctagtctttgttgataagggtaccgt 20008
Query: 168 gtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgttcatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20007 gtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgttcatg 19948
Query: 228 gttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaaatgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19947 gttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaaatgt 19888
Query: 288 attacgcagtccggcgatttctatttcacattcatcgatgctgccggagaaataaataga 347
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 19887 attacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaataga 19828
Query: 348 gtttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggctttg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19827 gtttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggctttg 19768
Query: 408 attcacaatggataaaacattggggtcagtattcttgtttttcgttcagaataggttgtt 467
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 19767 attcacaatggataaaacattggggtcagtattcttgttttccgttaagaataggttgtt 19708
Query: 468 acaatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgttatttga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 19707 acaatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgtaatttga 19648
Query: 528 ggtccttagttaattcatttagttcgatctttggattcagccaggacatgctattaaagg 587
||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 19647 ggt-cttagttaattcatctagttcgatctttggatccagccaggacatgctatcaaaga 19589
Query: 588 aaaattggaagg 599
||||| ||||||
Sbjct: 19588 aaaataggaagg 19577
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,747
Number of Sequences: 1807
Number of extensions: 10747
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 1034
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1018
effective length of database: 10,329,639
effective search space: 10515572502
effective search space used: 10515572502
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)