BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE04FM1.SCF screened BAC_end
(1006 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1223 0.0
>3x_Contig1781
Length = 20717
Score = 1223 bits (617), Expect = 0.0
Identities = 644/653 (98%)
Strand = Plus / Minus
Query: 87 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11817 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 11758
Query: 147 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11757 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 11698
Query: 207 cgttggttgcgatcattgtattagtattttcttgaagagatgatgatctgtctattatgg 266
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 11697 cgttggttgcgatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 11638
Query: 267 caggaaagatagcaggttgcaattctgttacctcaacttatatagtcactatatatatat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11637 caggaaagatagcaggttgcaattctgttacctcaacttatatagtcactatatatatat 11578
Query: 327 atatatatatattacaaaagagagtaaatcatcaaatcaacaagagtagtaccagtagta 386
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 11577 atatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagta 11518
Query: 387 gcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtgc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11517 gcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtgc 11458
Query: 447 cattgagatggaattttacaggttccggttcaccaatgtgttttgcgaaattccattgga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11457 cattgagatggaattttacaggttccggttcaccaatgtgttttgcgaaattccattgga 11398
Query: 507 atttcgacagccgaggtacaatcgaaacggcaaagctagacagccagacagccagacggg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11397 atttcgacagccgaggtacaatcgaaacggcaaagctagacagccagacagccagacggg 11338
Query: 567 gggaccactggtctggggacaacccaccatctattagtcattctacaaactgaatgaagc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11337 gggaccactggtctggggacaacccaccatctattagtcattctacaaactgaatgaagc 11278
Query: 627 tcgatgaggagggaactgagttccgataaagacttgaagacatgtatgggatagtcagtg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11277 tcgatgaggagggaactgagttccgataaagacttgaagacatgtatgggatagtcagtg 11218
Query: 687 tacgttggtatgcacgtgatttacgttgaggtatggggaaatcagtttggtgg 739
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11217 tacgttggtatgcacgtgatttacgttgaggtatggggaaatcaagttggtgg 11165
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,446
Number of Sequences: 1807
Number of extensions: 34446
Number of successful extensions: 5625
Number of sequences better than 1.0e-20: 1
length of query: 1006
length of database: 10,358,551
effective HSP length: 16
effective length of query: 990
effective length of database: 10,329,639
effective search space: 10226342610
effective search space used: 10226342610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)