BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE05RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1259 0.0
>3x_Contig1641
Length = 13261
Score = 1259 bits (635), Expect = 0.0
Identities = 727/750 (96%), Gaps = 6/750 (0%)
Strand = Plus / Plus
Query: 47 attttgacacattctacacactactgcaatagctttccgaaggcgtagactaacgcacca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10712 attttgacacattctacacactactgcaatagctttccgaaggcgtagactaacgcacca 10771
Query: 107 gtcccaaaccaaccggggaaccccatttgcaagaagtacacagacgaaaaaaacaaaaaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10772 gtcccaaaccaaccggggaaccccatttgcaagaagtacacagacgaaaaaaacaaaaaa 10831
Query: 167 agacacgtgaacggtaagatacaggaccctcactcagtatactcacatcacatctcatct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10832 agacacgtgaacggtaagatacaggaccctcactcagtatactcacatcacatctcatct 10891
Query: 227 cttctcatctcacctgtcacctcatctcatcgctgtcacactgaaaaaattcgaaatttt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10892 cttctcatctcacctgtcacctcatctcatcgctgtcacactgaaaaaattcgaaatttt 10951
Query: 287 ttttttttccaactcatcgcgacgaagaaaaagccactaaactcgacctcatcgagtctt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10952 ttttttttccaactcatcgcgacgaagaaaaagccactaaactcgacctcatcgagtctt 11011
Query: 347 gtcatttaacttgacactctttgtttcctaggcagaaacctgtctttattggttcagtac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11012 gtcatttaacttgacactctttgtttcctaggcagaaacctgtctttattggttcagtac 11071
Query: 407 tcagtctgacctcagtgatatcgactcagagcataactgtcaatacgttagtttattgtt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11072 tcagtctgacctcagtgatatcgactcagagcataactgtcaatacgttagtttattgtt 11131
Query: 467 agccgattttggaaggaatttaaggcgattttttgttg-ttaaaaag-aaaatcgttc-t 523
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct: 11132 agccgattttggaaggaatttaaggcgattttttgttgtttaaaaagaaaaatcgttcat 11191
Query: 524 aaactactgtcggttttattttggaccgttcaaaatttttattccctctcgttgtgttaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11192 aaactactgtcggttttattttggaccgttcaaaatttttattccctctcgttgtgttaa 11251
Query: 584 tgagaacaggtctttgagctagagaaatagagctattag-aagctgntactgtcgttttg 642
|||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||
Sbjct: 11252 tgagaacaggtctttgagctagagaattagagctattagaaagctgttactgtcgttttg 11311
Query: 643 attacattttcgaaatttttgagctgaattttggttttactgctctaaaatatggaattt 702
||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct: 11312 attacatttcgaaaatttttgagctgaattttggttttactgctct-aaatagtggattt 11370
Query: 703 tgttttggttgctgaacctttaacattaatactaacaatatttttaagtgaaagggtaga 762
||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||
Sbjct: 11371 tgttttggttgctgatactttacaattataactcacaatatttttaagtgaaagggtaga 11430
Query: 763 tgactgtacc-caaaacgtttccagtagga 791
|||||| ||| ||||||||||||||||||
Sbjct: 11431 tgactgcaccaaaaaacgtttccagtagga 11460
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,987
Number of Sequences: 1807
Number of extensions: 14987
Number of successful extensions: 302
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)