BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE06FM1.SCF screened BAC_end
(996 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1272 1622 0.0
>3x_Contig1272
Length = 8315
Score = 1622 bits (818), Expect = 0.0
Identities = 894/913 (97%), Gaps = 6/913 (0%)
Strand = Plus / Minus
Query: 86 caacaggctccactcctttcacttttggaaaacaggagaccgacaaaaaagatgagaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3480 caacaggctccactcctttcacttttggaaaacaggagaccgacaaaaaagatgagaaaa 3421
Query: 146 aacctacgtttacgtttggggcaacagcagcatcaactgtaccagcattcagttttggtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3420 aacctacgtttacgtttggggcaacagcagcatcaactgtaccagcattcagttttggtg 3361
Query: 206 ccaacaaatctgaagatgttttttcacaaggtgaatcatctggcttcaagatctctttac 265
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct: 3360 ccaacaaatctgaagaggcgcctccacaaggtgaatcatctggcttcaagatctctttac 3301
Query: 266 cctttgcctcatctgctccaacatctgataaggatactgccaaggaagttagtgaaaaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3300 cctttgcctcatctgctccaacatctgataaggatactgccaaggaagttagtgaaaaaa 3241
Query: 326 acagcgaagacgcatctgctgaggcacaagaagagccatctaaaactttgaatctatcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3240 acagcgaagacgcatctgctgaggcacaagaagagccatctaaaactttgaatctatcga 3181
Query: 386 acggtgaggagaatgagaatctactcttttcgcaacgcgccaagctaatgattttcaata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3180 acggtgaggagaatgagaatctactcttttcgcaacgcgccaagctaatgattttcaata 3121
Query: 446 ctgagacgaaagcctatgattcccgtggtgtaggtgaattgaaggttttgcaaaacaagg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3120 ctgagacgaaagcctatgattcccgtggtgtaggtgaattgaaggttttgcaaaacaagg 3061
Query: 506 aagacaatacaaaagcaagaatactttgtaggtcagacggtatgggtcatattttgctaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3060 aagacaatacaaaagcaagaatactttgtaggtcagacggtatgggtcatattttgctaa 3001
Query: 566 atactagtattataaagtcattttcctatgaagcattagatccaaataatgagaatttgg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3000 atactagtattataaagtcattttcctatgaagcattagatccaaataatgagaatttgg 2941
Query: 626 ttaagtgtcctgcaattaaagcggaaggagggttagacacatacgtcgtaaaagtgaaac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2940 ttaagtgtcctgcaattaaagcggaaggagggttagacacatacgtcgtaaaagtgaaac 2881
Query: 686 aaaaggctgatggtagaaaattagtacaagcgatcaaggatgctcaatcaccgatgtaaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2880 aaaaggctgatggtagaaaattagtacaagcgatcaaggatgctcaatcaccgatgtaaa 2821
Query: 746 attaagtacatttaactgttaattaatagaactatttgaacttagttcatatatgcatgt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2820 attaagtacatttaactgttaattaatagaactatttgaacttagttcatatatgcatgt 2761
Query: 806 gtaactattaaaatggc-aaaaaaagtactt-aaatagtcaatcttcagcacctttgagc 863
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2760 gtaactattaaaatggcaaaaaaaagtacttaaaatagtcaatcttcagcacctttgagc 2701
Query: 864 ttctcttctatcagttttttgaaagatgc-actgcccnagacagncntctacttnctcta 922
| ||||||||||||||||||||||||||| ||||||| |||||| | ||||||| |||||
Sbjct: 2700 tcctcttctatcagttttttgaaagatgcaactgcccaagacagtcttctactttctcta 2641
Query: 923 tcatgtncttttgagcccttcatacctgaaatatac-tgatataatcaaaa-gcttaga- 979
|||||| |||||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct: 2640 tcatgttcttttgagcctttcatacctgaaatatacttgatataatcaaaatgcttagat 2581
Query: 980 ataaaccatctta 992
|||||||||||||
Sbjct: 2580 ataaaccatctta 2568
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7087
Number of Sequences: 1807
Number of extensions: 7087
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 996
length of database: 10,358,551
effective HSP length: 16
effective length of query: 980
effective length of database: 10,329,639
effective search space: 10123046220
effective search space used: 10123046220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)