BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE07FM1.SCF screened BAC_end
(1054 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1267 0.0
>3x_Contig1781
Length = 20717
Score = 1267 bits (639), Expect = 0.0
Identities = 647/650 (99%)
Strand = Plus / Minus
Query: 90 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11817 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 11758
Query: 150 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11757 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 11698
Query: 210 cgttggttgcgatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11697 cgttggttgcgatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 11638
Query: 270 caggaaagatagcaggttgcaattctgttacctcaacttatatagtcactatatatatat 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11637 caggaaagatagcaggttgcaattctgttacctcaacttatatagtcactatatatatat 11578
Query: 330 atatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagta 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11577 atatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagta 11518
Query: 390 gcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtgc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11517 gcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtgc 11458
Query: 450 cattgagatggaattttacaggttccggttcaccaatgtgttttgcgaaattccattgga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11457 cattgagatggaattttacaggttccggttcaccaatgtgttttgcgaaattccattgga 11398
Query: 510 atttcgacagccgaggtacaatcgaaacggcaaagctagacagccagacagccagacggg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11397 atttcgacagccgaggtacaatcgaaacggcaaagctagacagccagacagccagacggg 11338
Query: 570 gggaccactggtctggggacaacccaccatctattagtcattctacaaactgaatgaagc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11337 gggaccactggtctggggacaacccaccatctattagtcattctacaaactgaatgaagc 11278
Query: 630 tcgatgaggagggaactgagttccgantaagacttgaagacatgtatgggatagtcagtg 689
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11277 tcgatgaggagggaactgagttccgataaagacttgaagacatgtatgggatagtcagtg 11218
Query: 690 tacgttggtatgcacgtgatttacgttgaggtatggggaaataaagttgg 739
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11217 tacgttggtatgcacgtgatttacgttgaggtatggggaaatcaagttgg 11168
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,340
Number of Sequences: 1807
Number of extensions: 51340
Number of successful extensions: 12831
Number of sequences better than 1.0e-20: 1
length of query: 1054
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1038
effective length of database: 10,329,639
effective search space: 10722165282
effective search space used: 10722165282
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)