BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE07RM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1505 0.0
>3x_Contig1807
Length = 66587
Score = 1505 bits (759), Expect = 0.0
Identities = 882/910 (96%), Gaps = 10/910 (1%)
Strand = Plus / Plus
Query: 48 aagaaactgcttggagcacaattcactaccgtataaatactttgcaatgcaggtaaacgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41450 aagaaactgcttggagcacaattcactaccgtataaatactttgcaatgcaggtaaacgg 41509
Query: 108 taaatcactgaccaattgtagaggatcgatatcggaaatctgttcagtatcaaggtcttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41510 taaatcactgaccaattgtagaggatcgatatcggaaatctgttcagtatcaaggtcttt 41569
Query: 168 aatccactcagaaatataatcgatcattactgggaagttttcgacggctgccttatgtgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41570 aatccactcagaaatataatcgatcattactgggaagttttcgacggctgccttatgtgt 41629
Query: 228 gaaaaaggaatcaaaaactttcctcatgcttaaccactctgaaccgttctggaaacctag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41630 gaaaaaggaatcaaaaactttcctcatgcttaaccactctgaaccgttctggaaacctag 41689
Query: 288 gcattcgccaagaagagccactagaaacgctccagccccaaagctatctagcttactatg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41690 gcattcgccaagaagagccactagaaacgctccagccccaaagctatctagcttactatg 41749
Query: 348 gtttttactgttggatttataatattccatcagttgctttggagttgttaagacaatctc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41750 gtttttactgttggatttataatattccatcagttgctttggagttgttaagacaatctc 41809
Query: 408 cttataggtgccgcttctctgcaaatacaggtcaccacactggtctctgtttttgataga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41810 cttataggtgccgcttctctgcaaatacaggtcaccacactggtctctgtttttgataga 41869
Query: 468 caagcttttgccgtccaagaatttggttcttgcgcagttttctttgttgtaaggcaacgt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41870 caagcttttgccgtccaagaatttggttcttgcgcagttttctttgttgtaaggcaacgt 41929
Query: 528 cttgcgctcatacccaaaaggagcggcgacggtctgtcccaaattattaaatccatatgc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41930 cttgcgctcatacccaaaaggagcggcgacggtctgtcccaaattattaaatccatatgc 41989
Query: 588 agctcgccattctttgagcangtataaaacgacgaaaagaactggcgtaaaatatacaaa 647
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 41990 agctcgccattctttgagcaggtataaaacgacgaaaagaactggcgtaaaatatacaaa 42049
Query: 648 agccatccagttcttcttga-taatgggattaatatatcagctaacatttcctttcctgt 706
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 42050 agccatccagttcttcttgattaatgggattaatatatcagctaacattt-ctttcctgt 42108
Query: 707 tgcgcttcaattgtctgttctttgagtatcgttagggctagaaaaaaagacaccttgaag 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 42109 tgcgcttcaattgtctgttctttgagtatcgttagggctagaaaaaaagacacctgaagg 42168
Query: 767 ttctccattagcattagaagagaccgttatcgatt-aaaaagcacagtatttattagcct 825
|| ||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 42169 ttttccattagcataagaagagacggttatcgattaaaaaagcacagtattta-tagcct 42227
Query: 826 tcat-ctacgacagttatgataattgaagagct-aagtaaataacctggtggctaga-tt 882
|||| |||||||||||||||||||||||||||| ||| ||||| | | |||||||| ||
Sbjct: 42228 tcatcctacgacagttatgataattgaagagctaaagaaaatagctggttggctagattt 42287
Query: 883 taccttccatatgactgcaatacacat-ttaacctggctttt-caataacct-taaccga 939
|| ||||||||||||||||||| || |||||||| ||||| ||||||||| ||||||
Sbjct: 42288 tagcttccatatgactgcaataacgatattaacctgtcttttacaataacctcaaaccga 42347
Query: 940 tatgatttac 949
||||||||||
Sbjct: 42348 tatgatttac 42357
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6712
Number of Sequences: 1807
Number of extensions: 6712
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)