BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE08RM1.SCF screened BAC_end
(1045 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1394 1516 0.0
>3x_Contig1394
Length = 5721
Score = 1516 bits (765), Expect = 0.0
Identities = 868/894 (97%), Gaps = 7/894 (0%)
Strand = Plus / Minus
Query: 45 tatcgacattctactctaagcatagtcccttacgaataccgtaaaagataatctaattca 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4913 tatcgacattctactctaagcatagtcccttacgaataccgtaaaagataatctaattca 4854
Query: 105 tagagagcacaaaaacatatcaatatgagtgagacaaaatatgctttggtcactggtgca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4853 tagagagcacaaaaacatatcaatatgagtgagacaaaatatgctttggtcactggtgca 4794
Query: 165 tcatcagggattggttatgaagtcacaaaggagttattgaggagagggtggtacgtgtac 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4793 tcatcagggattggttatgaagtcacaaaggagttattgaggagagggtggtacgtgtac 4734
Query: 225 gcatgtgccagaagaacacatcctatggaggaattaagagccgagtttggagatagatgc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4733 gcatgtgccagaagaacacatcctatggaggaattaagagccgagtttggagatagatgc 4674
Query: 285 atccctaggaaacttgatgtttcgaatcagaatgatatcacccagttgaagttgaagttg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4673 atccctaggaaacttgatgtttcgaatcagaatgatatcacccagttgaagttgaagttg 4614
Query: 345 gagcaagaattaccagatcagaagctacatctattatataataacgctggccaaagctgc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4613 gagcaagaattaccagatcagaagctacatctattatataataacgctggccaaagctgc 4554
Query: 405 tctctgcccgcaatagacgtgagcgaagaaatcatcgataatacattcagagtaaacgtt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4553 tctctgcccgcaatagacgtgagcgaagaaatcatcgataatacattcagagtaaacgtt 4494
Query: 465 tatggacccatcaactcatgtcgtgaattcgcaccattaatcataaacgctaaggggaca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4493 tatggacccatcaactcatgtcgtgaattcgcaccattaatcataaacgctaaggggaca 4434
Query: 525 atcgtcttcactgggtcattagctgggatatgtccatttccgtttggagcagtgtacagc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4433 atcgtcttcactgggtcattagctgggatatgtccatttccgtttggagcagtgtacagc 4374
Query: 585 gcatcaaaggctgcgattcatcaatacgctcgggtgttacacggagaattaggtcctttg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4373 gcatcaaaggctgcgattcatcaatacgctcgggtgttacacggagaattaggtcctttg 4314
Query: 645 ggcgtacgtgtcattaacatgattacaggangtgtagccacagacatcgctgataag-ag 703
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 4313 ggcgtacgtgtcattaacatgattacaggaggtgtagccacagacatcgctgataagaag 4254
Query: 704 acattaccagaaggtagtatcttcaacttcccgganggttataaagcccgntgaaacccg 763
||||||||||||||||||||||||||||||||||| || ||| || ||| |||||||||
Sbjct: 4253 acattaccagaaggtagtatcttcaacttcccggaggg-tatcaaagccgttgaaacccg 4195
Query: 764 taagaagatgttcagagaagaatcaaccgatgttaccagctgattacgccagagaaacgg 823
|||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 4194 taagaagatg-tcagagaagaatcaaccgatgtcaccagctgattacgcaagagaaacgg 4136
Query: 824 tggattgatttcgaaaacggcaccattgacccggtggaatatttaccggggaacgattgg 883
| || |||| |||||||||||| |||||||||||||| |||| ||||||||||||| |||
Sbjct: 4135 t-gaatgatatcgaaaacggcagcattgacccggtgg-atatataccggggaacga-tgg 4079
Query: 884 ccaggtaagtgaaatggtatatgctactgattcc-tacccattggtagaatggg 936
||| | ||||||||||| |||||||||||||| ||| ||||| |||||||||
Sbjct: 4078 ccacggtagtgaaatggttaatgctactgattccatacgcattgctagaatggg 4025
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6089
Number of Sequences: 1807
Number of extensions: 6089
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 1045
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1029
effective length of database: 10,329,639
effective search space: 10629198531
effective search space used: 10629198531
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)