BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE09FM1.SCF screened BAC_end
(1004 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1449 1178 0.0
>3x_Contig1449
Length = 7865
Score = 1178 bits (594), Expect = 0.0
Identities = 666/681 (97%), Gaps = 7/681 (1%)
Strand = Plus / Plus
Query: 83 tggcgtagagcttgcacttgtagacggtttagcaagtgtaggtggtgcatgtgagtgatg 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6743 tggcgtagagcttgcacttgtagacggtttagcaagtgtaggtggtgcatgtgagtgatg 6802
Query: 143 ggcatgttccttcctggcattgttgaaagcatccgcttcttcccctggttcatgtaaaaa 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6803 ggcatgttccttcctggcattgttgaaagcatccgcttcttcccctggttcatgtaaaaa 6862
Query: 203 catacagttcggatttggacatggttgtcccctcaaatacgaggagcagtactttgttgt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6863 catacagttcggatttggacatggttgtcccctcaaatacgaggagcagtactttgttgt 6922
Query: 263 accatatgctgctttcacttgatgtccatcaatatagataccatctatggcttgaataca 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6923 accatatgctgctttcacttgatgtccatcaatatagataccatctatggcttgaataca 6982
Query: 323 ttttgctgcatcgtcttttctggaaaaagtaacgtaaataccgtaacctgaatttatatg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6983 ttttgctgcatcgtcttttctggaaaaagtaacgtaaataccgtaacctgaatttatatg 7042
Query: 383 actcgatgaatttgaaacagaatggtgctcgtgtccagtcttcttattgatgacgatctt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7043 actcgatgaatttgaaacagaatggtgctcgtgtccagtcttcttattgatgacgatctt 7102
Query: 443 gttaatttttccatactggccaaaatacttgtccgatctcaagatggatggaagttcttc 502
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7103 gttaattttttcatactggccaaaatacttgtccgatctcaagatggatggaagttcttc 7162
Query: 503 gtaagggtaaggtggattcaacccaataacgtanaccaaattcttctgaatgaccctcat 562
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7163 gtaagggtaaggtggattcaacccaataacgtaaaccaaattcttctgaatgaccctcat 7222
Query: 563 anccagc-agctgtttcctattatgagtgtcattttctctacgttcacgctccctttgct 621
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7223 a-ccagcaagctgtttcctattatgagtgtcattttctctacgttcacgctccctttgct 7281
Query: 622 tacgatcacgtttcttttctggcctgcttggaacgttccattttcaactcttcttggaga 681
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7282 tacgatcacg-ttcttttctggcctgcttggaacgttccattttcaactcttc-tggaga 7339
Query: 682 aagaacgatgtactcgacgcctttattcgtcgtactttcgacgaacagcc-gacatcaac 740
||||||||||||||||||| |||| |||||||||||||||||| |||| |||||| ||
Sbjct: 7340 aagaacgatgtactcgacg-ctttcatcgtcgtactttcgacgacaagccggacatcgac 7398
Query: 741 cattaa-ctcaggaatttgac 760
|||||| ||||||| ||||||
Sbjct: 7399 cattaagctcaggattttgac 7419
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7048
Number of Sequences: 1807
Number of extensions: 7048
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 1004
length of database: 10,358,551
effective HSP length: 16
effective length of query: 988
effective length of database: 10,329,639
effective search space: 10205683332
effective search space used: 10205683332
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)