BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE09RM1.SCF screened BAC_end
(1017 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1196 1277 0.0
>3x_Contig1196
Length = 5660
Score = 1277 bits (644), Expect = 0.0
Identities = 762/791 (96%), Gaps = 8/791 (1%)
Strand = Plus / Plus
Query: 46 cttaaaaaaatatttaagttaagcatcaacaacagatggttacctttagttcaaatggca 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3858 cttaaaaaaatatttaagttaagcatcaacaacagatggttacctttagttcaaatggca 3917
Query: 106 ttcatacagtaggtgctacttttctacattcgcagtctcaaaacggtcagctgcatggct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3918 ttcatacagtaggtgctacttttctacattcgcagtctcaaaacggtcagctgcatggct 3977
Query: 166 aatttgcatgccctttttgtcttttcagcatgattgactttctgctttaatcatggaaaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3978 aatttgcatgccctttttgtcttttcagcatgattgactttctgctttaatcatggaaaa 4037
Query: 226 attgtttaaagaaaatgttacaactgcaatagtgttctatctacaagtgtcagatcaaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4038 attgtttaaagaaaatgttacaactgcaatagtgttctatctacaagtgtcagatcaaat 4097
Query: 286 caaaatcgaaagatacaacggataatcccgaggatgaaaccaggtatcaagatctccaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4098 caaaatcgaaagatacaacggataatcccgaggatgaaaccaggtatcaagatctccaaa 4157
Query: 346 cggtattcagctaggaacgcatcagtaataacggtgctattgctgctgatataccttatt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4158 cggtattcagctaggaacgcatcagtaataacggtgctattgctgctgatataccttatt 4217
Query: 406 tatatcaacaaggaaacaatacaaacaaaatatcagggaagccgaataaatcatgattca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4218 tatatcaacaaggaaacaatacaaacaaaatatcagggaagccgaataaatcatgattca 4277
Query: 466 gggggcgactctacaaaagataaaacacatacctttactatcaaagaaatacacttcaga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4278 gggggcgactctacaaaagataaaacacatacctttactatcaaagaaatacacttcaga 4337
Query: 526 ccgttggatgaaaaaacacagagttacgggtcactccaggtgacacctgagttttgtcaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4338 ccgttggatgaaaaaacacagagttacgggtcactccaggtgacacctgag-tttgtcaa 4396
Query: 586 catggccaaatcagaatttgaacaanacgtagcagttgcatcaggagacaatgaagattt 645
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4397 catggccaaatcagaatttgaacaaaacgtagcagttgcatcaggagacaatgaagattt 4456
Query: 646 gtaccgat-aacaacttttggagtgcgtcaataaagtccaaatcatggaacgcatcaatt 704
||| |||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 4457 gta-cgataaacaac-tttggagtgcgtcaataaagtccaatccatgg-acgcatcaatt 4513
Query: 705 tacactataaacaa-gccgcattcaaatgaaacgattgggtaaccggtatcccgattatg 763
||||||| |||||| || |||| ||||||||||| ||| ||||| ||||||||||||
Sbjct: 4514 tacacta-aaacaaggcagcatcaaaatgaaacgaatggtaaaccgagatcccgattatg 4572
Query: 764 tggagtctttcctaga-tattgccatgaaaaaccttgaatggcaaggaaagttattttga 822
|||||||||||||||| ||| ||||||||| ||| ||||||||||||||| ||||
Sbjct: 4573 tggagtctttcctagattatgcccatgaaaaccctgagatggcaaggaaagttcatttgg 4632
Query: 823 acttggtggat 833
||| |||||||
Sbjct: 4633 actgggtggat 4643
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7882
Number of Sequences: 1807
Number of extensions: 7882
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 1017
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1001
effective length of database: 10,329,639
effective search space: 10339968639
effective search space used: 10339968639
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)