BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE10FM1.SCF screened BAC_end
(998 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1516 0.0
>3x_Contig1720
Length = 19870
Score = 1516 bits (765), Expect = 0.0
Identities = 786/792 (99%), Gaps = 1/792 (0%)
Strand = Plus / Plus
Query: 87 tggaatgaccttgctgtagtaaagttcaaatatctataaatgagtactctgcatacatga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16598 tggaatgaccttgctgtagtaaagttcaaatatctataaatgagtactctgcatacatga 16657
Query: 147 tggaatgtcctgttaacagtagagttcgatcctaagaaagttttgatattggagtgatat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16658 tggaatgtcctgttaacagtagagttcgatcctaagaaagttttgatattggagtgatat 16717
Query: 207 ttctcactagtagctgattgatcattagacataagatccttgaactggtatgataagatt 266
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16718 ttctcactagtagctgagtgatcattagacataagatccttgaactggtatgataagatt 16777
Query: 267 tcatagactatctctgaaggtaaccgcatcgtcgatgtttcactgatcatattgaacgaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16778 tcatagactatctctgaaggtaaccgcatcgtcgatgtttcactgatcatattgaacgaa 16837
Query: 327 ttatgatatgcgagccccgaataacacgttttatacacttcaccaatccttaaagctatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16838 ttatgatatgcgagccccgaataacacgttttatacacttcaccaatccttaaagctatt 16897
Query: 387 tgcacctgttttggtgctcttgatgatttctttaagatccactttggttttcattttttc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16898 tgcacctgttttggtgctcttgatgatttctttaagatccactttggttttcattttttc 16957
Query: 447 ttctattgatgcgggtcttttgttcaagttcttgttcattctaattatatcgctacttta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16958 ttctattgatgcgggtcttttgttcaagttcttgttcattctaattatatcgctacttta 17017
Query: 507 tttttcatttcagggcataaagtacacttaaggttcataagggatcaaagagtatgaaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17018 tttttcatttcagggcataaagtacacttaaggttcataagggatcaaagagtatgaaaa 17077
Query: 567 acgtgatgtggttattcgtagctttacttagttatgtaattaactatatgattgtctaat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17078 acgtgatgtggttattcgtagctttacttagttatgtaattaactatatgattgtctaat 17137
Query: 627 atgagtatgagaattcttgtattacttttcctcaatttgacagactaggcgtcctaatga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17138 atgagtatgagaattcttgtattacttttcctcaatttgacagactaggcgtcctaatga 17197
Query: 687 gaagtacccatgaaacgtaaaatccttgagtctcagtacattcattcaaagactatgcgg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17198 gaagtacccatgaaacgtaaaatccttgagtctcagtacattcattcaaagactatgcgg 17257
Query: 747 atagtttttttttagttcatagaatatcgaacatatcaatttagaggcttcataanctta 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 17258 atagtttttttttagttcatagaatatcgaacatatcaatttagaggcttcataacttca 17317
Query: 807 ccataaagcatctttttcaacagttccagtggaatatcgtcttcctcg-ttttatcgcgg 865
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 17318 ccataaagcatctttttcaacagttccagtggaatatcgtcttcctcgtttttatcgcgg 17377
Query: 866 ccctcgttgtca 877
|||||||||||
Sbjct: 17378 gcctcgttgtca 17389
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7606
Number of Sequences: 1807
Number of extensions: 7606
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 998
length of database: 10,358,551
effective HSP length: 16
effective length of query: 982
effective length of database: 10,329,639
effective search space: 10143705498
effective search space used: 10143705498
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)