BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE10RM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1706 1744 0.0
>3x_Contig1706
Length = 16303
Score = 1744 bits (880), Expect = 0.0
Identities = 945/959 (98%), Gaps = 6/959 (0%)
Strand = Plus / Plus
Query: 46 cttgctaagattcttcgtcattgatataccacaagatgtggtatatcccaacatatcatc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cttgctaagattcttcgtcattgatataccacaagatgtggtatatcccaacatatcatc 361
Query: 106 aatttggtttctgattgtgttagtagaattacttgctaagcacataaggacatcatccca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aatttggtttctgattgtgttagtagaattacttgctaagcacataaggacatcatccca 421
Query: 166 atcctcaaataagggcctattctgtgaattgaatacctctccactgaactgaatgctgag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atcctcaaataagggcctattctgtgaattgaatacctctccactgaactgaatgctgag 481
Query: 226 tttagttggtaaactgggtaaatggtcatttaaatcgtaccttccatcctggaaaatacc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tttagttggtaaactgggtaaatggtcatttaaatcgtaccttccatcctggaaaatacc 541
Query: 286 cctaatatcagcaaaatcggtataggaatcatccatgagaagttcataaaataatttgcg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cctaatatcagcaaaatcggtataggaatcatccatgagaagttcataaaataatttgcg 601
Query: 346 tcccaattctatgaaagcttcgtccacactggctttctcaactaaatcgtattcatcttg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tcccaattctatgaaagcttcgtccacactggctttctcaactaaatcgtattcatcttg 661
Query: 406 aaataatttgatgagtttgcgactttctcttctgtacggttctaaggcaactttatagtt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aaataatttgatgagtttgcgactttctcttctgtacggttctaaggcaactttatagtt 721
Query: 466 tgttggacttaactttttactctcgtcttctacccatgatccgcacccatcatggtactg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgttggacttaactttttactctcgtcttctacccatgatccgcacccatcatggtactg 781
Query: 526 ccaatagtcttcccctttacggaaaacagctgtgtgtatcggaatgattttatcacactt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ccaatagtcttcccctttacggaaaacagctgtgtgtatcggaatgattttatcacactt 841
Query: 586 ttttatcgcatcaagtatgctctccatgcgggacacattatactttcgagctgcataaga 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ttttatcgcatcaagtatgctctccatgcgggacacattatactttcgagctgcataaga 901
Query: 646 aacggctaaaatactagtccattgtactgcaactaccggatcatcccttgaaaaaccgca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 aacggctaaaatactagtccattgtactgcaactaccggatcatcccttgaaaaaccgca 961
Query: 706 tcgtacctgttctacctgtgcanaaaaggcattgacatcaatgtgtgcaatgcatgctaa 765
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 962 tcgtacctgttctacctgtgcaaaaaaggcattgacatcaatgtgtgcaatgcatgctaa 1021
Query: 766 tggagaaag-aagctcttctctttgtcattcaaatcaatcaaatctcgccatctgtattt 824
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 tggagaaagaaagctcttctctttgtcattcaaatcaatcaaatctcgccatctgtattt 1081
Query: 825 cgacattatgctataccatcaatttcctggaatgcgatctttagcacccagctgcttact 884
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1082 cgacattatgctataccatcaatttcctgaaatgcgatctttagcacccagctgcttact 1141
Query: 885 ttagtttccatttccactcg-atatctacgttgtactaaagcaccttgttttaatgaaac 943
|||||||||||||| ||| |||||||||||||||||| ||| |||||||||||| |||
Sbjct: 1142 ttagtttccatttcacttcgaatatctacgttgtactaaggca-cttgttttaatg-aac 1199
Query: 944 cccgtaccaattc-accgaaccagagatgagatgagatgacttgttcaaaaagaaaaaa 1001
|||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1200 cccgta-caattcaacagaacaagagatgagatgagatgacttgttcaaaaagaaaaaa 1257
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8277
Number of Sequences: 1807
Number of extensions: 8277
Number of successful extensions: 326
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)