BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE11RM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1689 0.0
>3x_Contig1763
Length = 22654
Score = 1689 bits (852), Expect = 0.0
Identities = 923/943 (97%), Gaps = 3/943 (0%)
Strand = Plus / Minus
Query: 45 cttgggatgcatgtttgaggttattctgcaatagaggtgagactgttcttatggaggaat 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21877 cttgggatgcatgtttgaggttattctgcaatagaggtgagactgttcttatggaggaat 21818
Query: 105 acacatattcttcatcgttagaagccgctgttgctcagggactcaactgtgttgcaatga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21817 acacatattcttcatcgttagaagccgctgttgctcagggactcaactgtgttgcaatga 21758
Query: 165 aaatggataaagatgggatcaaggtagataaattaagcgagatgttaagggattgggatg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21757 aaatggataaagatgggatcaaggtagataaattaagcgagatgttaagggattgggatg 21698
Query: 225 ttgcagttcaagggcctttcccaaaattattatacaccattccaaatggtcataatccaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21697 ttgcagttcaagggcctttcccaaaattattatacaccattccaaatggtcataatccaa 21638
Query: 285 ccggttgtactttgcacgaggaaagaaaacctgagcttgtaaggcttgcatcgcagtacg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21637 ccggttgtactttgcacgaggaaagaaaacctgagcttgtaaggcttgcatcgcagtacg 21578
Query: 345 attttattatcatcgaagatgatccatactatttcctacaaatgaacgagttcggtgcac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21577 attttattatcatcgaagatgatccatactatttcctacaaatgaacgagttcggtgcac 21518
Query: 405 ctgagttgaatgtccccggggacgtcaacgaaatgcaatggttcaaagaaaattttgtta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21517 ctgagttgaatgtccccggggacgtcaacgaaatgcaatggttcaaagaaaattttgtta 21458
Query: 465 ataaattgggcaggtctctattggaatgggatgacgttggtagaattattaggttagaat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21457 ataaattgggcaggtctctattggaatgggatgacgttggtagaattattaggttagaat 21398
Query: 525 cggtgtcgaaaacttttgctccagggtgccgtctaggctgggctattggccccaggtatc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21397 cggtgtcgaaaacttttgctccagggtgccgtctaggctgggctattggccccaggtatc 21338
Query: 585 tactagatcacctttggaactatcatgaagtatcaatgcagtcaacttgcggatttgccc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21337 tactagatcacctttggaactatcatgaagtatcaatgcagtcaacttgcggatttgccc 21278
Query: 645 aaactcttatcaacggaatgttccaaagatggggtcaaattgggtatatgaaatggttac 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21277 aaactcttatcaacggaatgttccaaagatggggtcaaattgggtatatgaaatggttac 21218
Query: 705 taaggctgagaaatagctattcaatgaaaagagatcattgtttgactcaatgccaaaaat 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21217 taaggctgagaaatagctattcaatgaaaagagatcattgtttgactcaatgccaaaaat 21158
Query: 765 atttgccaaatgaagtttgctctataaacttaccaatcttcgggaatgtttttcatggta 824
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 21157 atttgccaaatgaagtttgctctataaacttaccaatc-tcgggaatgtttttcatggta 21099
Query: 825 tatattgaccctcacaagcatncaaagttcgaaagggaaaatttagtcaaagtttgacct 884
||||||||||||||||||||| ||||||||||||||| || || |||||||| |||||||
Sbjct: 21098 tatattgaccctcacaagcatccaaagttcgaaaggg-aatttaagtcaaaggttgacct 21040
Query: 885 actttgagaacatctatacaacagcttttgttaaaatgggatgttggtggcatgttcttt 944
|||| ||||||||||||||||||||| | | |||||||||||| ||||||||||||
Sbjct: 21039 acttgaggaacatctatacaacagctttgttcagaatgggatgttgttggcatgttcttc 20980
Query: 945 ctgttttagagtcgatccaattcat-attaaatattagctttt 986
||| |||||||| ||||||| |||| || ||||||||||||||
Sbjct: 20979 ctggtttagagttgatccaaatcataataaaatattagctttt 20937
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7288
Number of Sequences: 1807
Number of extensions: 7288
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)