BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE12FM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1404 1449 0.0
>3x_Contig1404
Length = 8096
Score = 1449 bits (731), Expect = 0.0
Identities = 779/792 (98%), Gaps = 3/792 (0%)
Strand = Plus / Plus
Query: 92 tcttctcctttttctgcttttcatgtaaaatttcaatgtgttgttcaagtgaggcaactt 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 tcttctcctttttctgcttttcatgtaaaatttcaatgtgttgttcaagtgaggcaactt 5551
Query: 152 ttgcgatttgcatcttgatctcaattcctcctttctgcatgattctatccttgagatcat 211
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 ttgcgatttgcatcttgagctcaattcctcctttctgcatgattctatccttgagatcat 5611
Query: 212 -aatcn-atcnnttctaaactttgaagcatcaattgtttgctgcaaatgttgtctcaaaa 269
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 caatcttatcttggctaaactttgaagcatcaattgtttgctgcaaatgttgtctcaaaa 5671
Query: 270 tatctagtttcttctcttcatccaacagtggctgttgattcttctcgttcatagaaagtt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 tatctagtttcttctcttcatccaacagtggctgttgattcttctcgttcatagaaagtt 5731
Query: 330 ccctagcaagctgtgatagtcgttggtgataggattccacctcagcgacccgagatcctt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5732 ccctagcaagctgtgatagtcgttggtgataggattccacctcagcgacccgagatcctt 5791
Query: 390 tctcaagttgtattttggaaatctgaatatcaatctccggaagacgatctgttaactttt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 tctcaagttgtattttggaaatctgaatatcaatctccggaagacgatctgttaactttt 5851
Query: 450 gtaatgcagattccatctcatggaccatcgatagagctgacctataattagtttctttgg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5852 gtaatgcagattccatctcatggaccatcgatagagctgacctataattagtttctttgg 5911
Query: 510 ttgaaagttgtacttccattttctccacttcatcgcgagaatattgacttgccgtagtag 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5912 ttgaaagttgtacttccattttctccacttcatcgcgagaatattgacttgccgtagtag 5971
Query: 570 cttttgatctcattaagccactttggggagaagaaccccctcctgacattgtaccggaaa 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5972 cttttgatctcattaagccactttggggagaagaaccccctcctgacattgtaccggaaa 6031
Query: 630 tatcgattaatttcccatccaacgtgaccactctgaaccttcttttcccgtaggctactc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6032 tatcgattaatttcccatccaacgtgaccactctgaaccttcttttcccgtaggctactc 6091
Query: 690 gattagcttgctgtaaatccctggcaactaacgtatctctgagaactgagtagaatgcag 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6092 gattagcttgctgtaaatccctggcaactaacgtatctctgagaactgagtagaatgcag 6151
Query: 750 gtcggaataaatcacggacaggggttataatatcaaaaagcctaggtacattttaaggag 809
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 6152 gtcggaataaatcacggacaggggttataagatcaaaaagcctaggtacattttcaggag 6211
Query: 810 tggctattctgtccaaattgcatttacgtaatttatccaagagaatgaaacgccc-tacc 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6212 tggctattctgtccaaattgcatttacgtaatttatccaagagaatgaaacgcccatacc 6271
Query: 869 cctacttatttt 880
| |||||||||
Sbjct: 6272 ctaacttatttt 6283
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6497
Number of Sequences: 1807
Number of extensions: 6497
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)