BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZE12RM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1695 0.0
>3x_Contig1604
Length = 15703
Score = 1695 bits (855), Expect = 0.0
Identities = 926/944 (98%), Gaps = 6/944 (0%)
Strand = Plus / Plus
Query: 43 cttttaaaatttaaaatctaaaatttcttaaatcccgaaaaagaactgatcttatgatgt 102
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 8099 cttttaaaatttaaaatctaaaatc-cttaaatcccgaaaaagaactgatcttatgatgt 8157
Query: 103 gataaattcaaacacatacacaaacctaaacgcaagcaaagcctgctaagaaatgtggtt 162
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8158 gataaattcaaacacatacacaaacctaaacgcaagcaaagcctgctaagacatgtggtt 8217
Query: 163 tatacttagaaagaaatctgtaattggaattacaatatatctttaaacgaacaaaaacca 222
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8218 tatacttagaaagacatctgtaattggaattacaatatatctttaaacgaacaaaaacca 8277
Query: 223 tgctatgagatgttgctgttccgtgtgctctcgagcgatagaaagaaatttttcattacg 282
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8278 tgcgatgagatgttgctgttccgtgtgctctcgagcgatagaaagaaatttttcattacg 8337
Query: 283 ctttaagggaaatgggaaaaagtacggtcacgtgaaacaaagacacagagagggaacgcc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8338 ctttaagggaaatgggaaaaagtacggtcacgtgaaacaaagacacagagagggaacgcc 8397
Query: 343 ctgttctaacatcagacacagggttggtggtaccaagggccccaccaatatctgtttaac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8398 ctgttctaacatcagacacagggttggtggtaccaagggccccaccaatatctgtttaac 8457
Query: 403 cattaaatatgcaaaactgatatatttcgatccaatcctgacatactctaaatcatttca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8458 cattaaatatgcaaaactgatatatttcgatccaatcctgacatactctaaatcatttca 8517
Query: 463 aatgtcaaacgatgtgacaaaccgctgcaagattatggttcaatcttatacaggatttgc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8518 aatgtcaaacgatgtgacaaaccgctgcaagattatggttcaatcttatacaggatttgc 8577
Query: 523 ttccaccccggatgaatgcaattatacgcgtacataagttctgtaccccctttgctaccg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8578 ttccaccccggatgaatgcaattatacgcgtacataagttctgtaccccctttgctaccg 8637
Query: 583 accttaaattgcttcgcagtttggctatcttgtcttattatcccctttcaagttggagaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8638 accttaaattgcttcgcagtttggctatcttgtcttattatcccctttcaagttggagaa 8697
Query: 643 ttgctcaatccattaggtactgaaattgttcaacaatcgtagtagctttttttttttggt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8698 ttgctcaatccattaggtactgaaattgttcaacaatcgtagtagctttttttttttggt 8757
Query: 703 cactcactattctccatctgctgaaacaaatttgaacctgaacattgagtggaacgaact 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8758 cactcactattctccatctgctgaaacaaatttgaacctgaacattgagtggaacgaact 8817
Query: 763 tgacgagaacagaagaatggtagcagtctncctttaattgctgcatacttaacttacgtt 822
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8818 tgacgagaacagaagaatggtagcagtctccctttaattgctgcatacttaacttacgtt 8877
Query: 823 gatatctttgaccaaatatatctatatatacncgagatctacagcgtcttataatatcct 882
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 8878 gatatctttgaccaaatatatctatatatac-cgagatctacagcgtcttataatatcct 8936
Query: 883 ggccggttatcaacatcatctattatacc--attntaccctagcatt-cataatgtttga 939
||| ||||||||||||||||||||||||| || |||| ||||||| |||||||||
Sbjct: 8937 ggcgggttatcaacatcatctattatacccatttttaccatagcattccataatgttgag 8996
Query: 940 gcattcctattgtagagcacagc-acagtcattgagacacgttt 982
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8997 gcattcctattgtagagcacagcaacagtcattgagacacgttt 9040
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,999
Number of Sequences: 1807
Number of extensions: 12999
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)