BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF01FM1.SCF screened BAC_end
(1050 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1537 876 0.0
>3x_Contig1537
Length = 10796
Score = 876 bits (442), Expect = 0.0
Identities = 493/506 (97%), Gaps = 3/506 (0%)
Strand = Plus / Minus
Query: 86 atcgaaataattcagtatcgtcttattttcaggagctattacccctgcaggtcccacacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7827 atcgaaataattcagtatcgtcttattttcaggagctattacccctgcaggtcccacacc 7768
Query: 146 atctatattattatggccctgaggatggttgttatatgggatgtcgttccggtgattctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7767 atctatattattatggccctgaggatggttgttatatgggatgtcgttccggtgattctt 7708
Query: 206 attcaatgatgcgtactgactgttatcagatcctaacgcggaaaacggcagattatttgt 265
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 7707 attcaatgatgcgtactgactgctagcagatcctaacgcggaaaacggcagattatttgt 7648
Query: 266 ctggtgttgtgatggcggtgcaggcgtgctaacatatttgactctattcaacaactctct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7647 ctggtgttgtgatggcggtgcaggcgtgctaacatatttgactctattcaacaactctct 7588
Query: 326 tattgtaggatcaaccttctctgaattcaaactagttaccatgattgcctctgctgcctt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7587 tattgtaggatcaaccttctctgaattcaaactagttaccatgattgcctctgctgcctt 7528
Query: 386 ctggaaaaagatactatcttcgttcatgggttattaattagaaaaaaaccaaaaattcta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7527 ctggaaaaagatactatcttcgttcatgggttattaattagaaaaaaaccaaaaattcta 7468
Query: 446 tgttcgtacctctcctgcctctcttactctctctatcggtggtttgc-aatttaactcaa 504
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 7467 tgttcgtacctctcctgcctctcttactctctctatcggtggtttgcaaatctaactcaa 7408
Query: 505 aagagtacctcaaaacttcgctgttttactttcgttaacttggataaccgagccctttta 564
||||||||||||||||||||||||| ||||||||||||||| ||| | ||||| | | ||
Sbjct: 7407 aagagtacctcaaaacttcgctgttatactttcgttaactt-gatgagcgagcac-tcta 7350
Query: 565 tgaaatgttttcggttgttccttttt 590
|||||||| | |||||||||||||||
Sbjct: 7349 tgaaatgtatccggttgttccttttt 7324
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9700
Number of Sequences: 1807
Number of extensions: 9700
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 1050
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1034
effective length of database: 10,329,639
effective search space: 10680846726
effective search space used: 10680846726
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)