BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZF01RM1.SCF screened BAC_end
         (1047 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1479                                                        1057   0.0  

>3x_Contig1479 
          Length = 7316

 Score = 1057 bits (533), Expect = 0.0
 Identities = 620/643 (96%), Gaps = 5/643 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   aagcttgaagatactatctatgatgcggcaaagcaaatcttggattatgaangcttctca 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3071 aagcttgaagatactatctatgatgcggcaaagcaaatcttggattatgaa-gcttctca 3129

                                                                        
Query: 109  aaaataagtttagggcttattcaataatatgtcatgccgaatgagtttctcataaacttg 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3130 aaaataagtttagggcttattcaataatatgtcatgccgaatgagtttctcataaacttg 3189

                                                                        
Query: 169  aactatagttttgcacatagcgtttataaagttttaagctttttcaatgtatctcgggct 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3190 aactatagttttgcacatagcgtttataaagttttaagctttttcaatgtatctcgggct 3249

                                                                        
Query: 229  atgctcttacattttagatcgacgttggtggccaggtcatacctcaaacttaaatcttac 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3250 atgctcttacattttagatcgacgttggtggccaggtcatacctcaaacttaaatcttac 3309

                                                                        
Query: 289  aagagtttaatttaattttactatagtttacatattcagatggaacgtcttttatggatc 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3310 aagagtttaatttaattttactatagtttacatattcagatggaacgtcttttatggatc 3369

                                                                        
Query: 349  tacattatctttaccagtgctctgttatgaacgtcaacttacatgcagccaaaacctatt 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3370 tacattatctttaccagtgctctgttatgaacgtcaacttacatgcagccaaaacctatt 3429

                                                                        
Query: 409  gggcatatcagcaaggcaaatatgaggacaaaatgactgtcgataagaacaganataggt 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3430 gggcatatcagcaaggcaaatatgaggacaaaatgactgtcgataagaacagaaataggt 3489

                                                                        
Query: 469  aaaaggaaaaaaaagaggattattaactgatagtgagtatcagcattctgataaaagatc 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3490 aaaaggaaaaaaaagaggattattaactgatagtgagtatcagcattctgataaaagatc 3549

                                                                        
Query: 529  anattttgttttcataccgtttggatttttctcatagttcgtgaattattcgaattgatt 588
            | | ||||||||||||||||||||| ||||||||||||||||||  ||||||| |  |||
Sbjct: 3550 aaa-tttgttttcataccgtttgga-ttttctcatagttcgtgatatattcgattgaatt 3607

                                                                        
Query: 589  catggtattattcacctttataccatgtttgaatgttatgaagtaaaacctaaaccattg 648
            ||||||||  | || ||||||| |||||||||||| ||||| |||||||||||| || ||
Sbjct: 3608 catggtatattccaactttataacatgtttgaatg-tatgaggtaaaacctaaaacaatg 3666

                                                       
Query: 649  gttggaacatttttcaaaggaattgcaaaatgatccttttttc 691
            |||||||||| ||||||| ||| ||||||||||||||| ||||
Sbjct: 3667 gttggaacatctttcaaa-gaagtgcaaaatgatccttctttc 3708


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9952
Number of Sequences: 1807
Number of extensions: 9952
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 1047
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1031
effective length of database: 10,329,639
effective search space: 10649857809
effective search space used: 10649857809
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)