BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF02RM1.SCF screened BAC_end
(1049 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1544 0.0
>3x_Contig1303
Length = 8112
Score = 1544 bits (779), Expect = 0.0
Identities = 938/981 (95%), Gaps = 8/981 (0%)
Strand = Plus / Plus
Query: 47 tgttgaaggagcactacgctgacttggtttc-aagcc-ttcttcc-atctctattgtctt 103
||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 4232 tgttgaaggagcactacgctgacttggtttccaagccattcttcccatctctattgtctt 4291
Query: 104 acatgacttctggtccagttttagctactgtctgggaaggtaaggatgttgttaagcaag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4292 acatgacttctggtccagttttagctactgtctgggaaggtaaggatgttgttaagcaag 4351
Query: 164 gtcgtgctatcttgggtgctaccaacccattgcaatctgctccaggtaccatcagaggtg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4352 gtcgtgctatcttgggtgctaccaacccattgcaatctgctccaggtaccatcagaggtg 4411
Query: 224 actttgccattgaagttggtagaaatgtctgtcacggttctgactctgttgaatctgctg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4412 actttgccattgaagttggtagaaatgtctgtcacggttctgactctgttgaatctgctg 4471
Query: 284 aaaaggaaatcggcttgtggttcaagaaggaagaacttattgactacaagttgaaccaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4472 aaaaggaaatcggcttgtggttcaagaaggaagaacttattgactacaagttgaaccaat 4531
Query: 344 tgtcttggatctacgaataaatgtaacgttgacaaattgttcactttatcaatacatatt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4532 tgtcttggatctacgaataaatgtaacgttgacaaattgttcactttatcaatacatatt 4591
Query: 404 ctttcccacaattattccatatttaaagatgtcttttcttatatgatgtgtatctgtgtg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4592 ctttcccacaattattccatatttaaagatgtcttttcttatatgatgtgtatctgtgtg 4651
Query: 464 tcggtatttattactatgtagatatatctcaaatacacacattttgaaatccattaagct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4652 tcggtatttattactatgtagatatatctcaaatacacacattttgaaatccattaagct 4711
Query: 524 ttatactgcgatgttgtattcatatttgtaaccccgacttgcgttgggtatattcacgtt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4712 ttatactgcgatgttgtattcatatttgtaaccccgacttgcgttgggtatattcacgtt 4771
Query: 584 tctaccagcttactgatacgattacggttcaatttgcatttatgtttgtcatagtattat 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4772 tctaccagcttactgatacgattacggttcaatttgcatttatgtttgtcatagtattat 4831
Query: 644 tttacttaattgcactaaaaaatttcagttagcacatctgttcttcatcacaaatgcatc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4832 tttacttaattgcactaaaaaatttcagttagcacatctgttcttcatcacaaatgcatc 4891
Query: 704 tcctaacgaaaacatgagctgttatcacaatacctcagacaagatccnttcataaaactg 763
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 4892 -cctaacgaaaacatgagctgttatcacaatacctcagacaagatccttcagtaaaactg 4950
Query: 764 cgttctttcacgaatgctcttctagaaaagaaatagatagaagtaccccggagaagagtg 823
|||||||||||||||||||| |||||||||||||| || ||| || | ||| |||||
Sbjct: 4951 cgttctttcacgaatgctctctaagaaaagaaatagaaggaggta-ccggaagaggagtg 5009
Query: 824 ctgactcttcccgttgattcaaattatgtatttcganctttaccacccaatttaacagaa 883
|||||||||||||| |||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct: 5010 ctgactcttcccgtgaattcaaattatgta-ttcgatctttaccaccaaatttaacagaa 5068
Query: 884 ggagcattccttaagcccttttacagagaacaacttcgatgtgctttcatttcaaaaatt 943
||||| | | | ||| |||| |||||||||| ||||||||| ||||||||||||||
Sbjct: 5069 -gagcaattcatcagcactttacaagagaacaacatcgatgtgcattcatttcaaaaatc 5127
Query: 944 attctactacgtgcaaggtcattactccacaaaggtgttaaggaaacagacttgtgtcta 1003
||||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||
Sbjct: 5128 attctactacgtgcaaggtcattactccagcaaggtgttcaagaaacagactt-tgtcta 5186
Query: 1004 gggcatttattccattggact 1024
|||||| ||| | ||||||||
Sbjct: 5187 gggcatatatccaattggact 5207
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7844
Number of Sequences: 1807
Number of extensions: 7844
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 1049
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1033
effective length of database: 10,329,639
effective search space: 10670517087
effective search space used: 10670517087
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)