BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF03FM1.SCF screened BAC_end
(1011 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1369 210 4e-54
3x_Contig496 125 2e-28
>3x_Contig1369
Length = 7461
Score = 210 bits (106), Expect = 4e-54
Identities = 197/222 (88%), Gaps = 4/222 (1%)
Strand = Plus / Plus
Query: 452 cctaggatagttgcgaactattagctatgatcatcagaagtttcaaactattttaagtag 511
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 18 cctaggatagttgcgaactataagctatgatcatcagaagtttcaaactattttaagtag 77
Query: 512 ttacttcctgatagtattcagtagtacttttacatgactttgcatgca-taagcccaatt 570
||||| ||||||||||| |||||||||||| ||||||||| ||||| |||||| ||||
Sbjct: 78 ttactccctgatagtatacagtagtactttaacatgacttgcaatgcattaagccaaatt 137
Query: 571 cagcgttagtttggaacgttcccaccggatccaaattcgtttc-aattacataaggaagg 629
|||||||||| ||| ||||| |||| |||| ||| ||| ||| |||||||||| | |||
Sbjct: 138 cagcgttagtctgg-acgtttccacgtgatcaaaactcgcttcaaattacataatggagg 196
Query: 630 aaatccggaaaattggaaataaggttcgacggaaaaggttta 671
|||| || ||||||||||||| ||||||||||||| |||||
Sbjct: 197 aaat-cgtgaaattggaaataatgttcgacggaaaatgttta 237
>3x_Contig496
Length = 2617
Score = 125 bits (63), Expect = 2e-28
Identities = 132/150 (88%), Gaps = 5/150 (3%)
Strand = Plus / Minus
Query: 87 gacttgtagtatgattctaaattcaacttgtctaatatttggtttattac-cttggggtt 145
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 434 gacttgtagtatgattctaaattcaacttgtctaatatttggtttattactcttggggtt 375
Query: 146 tttctcaaat--tgacttccataactgg-tatgaatcttatttgctagtggtagaaccga 202
||||||| || || || ||||||||| ||| |||||||||||||||||||| ||| |
Sbjct: 374 tttctcatatattgtttttcataactgggtatttatcttatttgctagtggtagtaccta 315
Query: 203 cttcagaaacgaact-cttggtcatgatta 231
|| || ||||| | ||||||||||||||
Sbjct: 314 ttttagttacgaatttcttggtcatgatta 285
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6584
Number of Sequences: 1807
Number of extensions: 6584
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 1011
length of database: 10,358,551
effective HSP length: 16
effective length of query: 995
effective length of database: 10,329,639
effective search space: 10277990805
effective search space used: 10277990805
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)