BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZF04RM1.SCF screened BAC_end
         (994 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig304                                                         1768   0.0  

>3x_Contig304 
          Length = 1230

 Score = 1768 bits (892), Expect = 0.0
 Identities = 936/948 (98%), Gaps = 2/948 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   tcacttctgtgtcgaagaggcatatgaccttaggaatggaaggtttgttgacgatgctaa 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79   tcacttctgtgtcgaagaggcatatgaccttaggaatggaaggtttgttgacgatgctaa 138

                                                                        
Query: 107  ggacaatttcatatttgatgattctcagatattacccttagatgaggtcgtagaacttgt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139  ggacaatttcatatttgatgattctcagatattacccttagatgaggtcgtagaacttgt 198

                                                                        
Query: 167  ccaaaacctcattgataaatacttgattccacacaacagagcggaacactcttggaaaag 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199  ccaaaacctcattgataaatacttgattccacacaacagagcggaacactcttggaaaag 258

                                                                        
Query: 227  agcattggttgggcatggtatatcaggggatattagctggctagaatcgttggacataag 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259  agcattggttgggcatggtatatcaggggatattagctggctagaatcgttggacataag 318

                                                                        
Query: 287  attaccgaataatgttcaaaccttggatacccaaaaattattcgagaatatgtacggaag 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319  attaccgaataatgttcaaaccttggatacccaaaaattattcgagaatatgtacggaag 378

                                                                        
Query: 347  acaatcatcactcaagaggctactgaatttatgcagaataccacactcctaccttcataa 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379  acaatcatcactcaagaggctactgaatttatgcagaataccacactcctaccttcataa 438

                                                                        
Query: 407  cgcggggaatgattcctactacactctacagttacttttgtcaatgtgcgatataggaac 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439  cgcggggaatgattcctactacactctacagttacttttgtcaatgtgcgatataggaac 498

                                                                        
Query: 467  aagaatcaagttggatttggacaattggcatcatgtaagaagattagaggagaatttata 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499  aagaatcaagttggatttggacaattggcatcatgtaagaagattagaggagaatttata 558

                                                                        
Query: 527  ttgtgtggagcagctcgaaaaacaagggaagcgtaaaagaaatcgtggaaacaatttctc 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559  ttgtgtggagcagctcgaaaaacaagggaagcgtaaaagaaatcgtggaaacaatttctc 618

                                                                        
Query: 587  acaacgctaagaaatgcattttttctacaatattcgcgctgatattacagtatatagatg 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619  acaacgctaagaaatgcattttttctacaatattcgcgctgatattacagtatatagatg 678

                                                                        
Query: 647  tgcatacgttatgctcatatatatattatattttgctgcccgtaatcacagttcaacctt 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679  tgcatacgttatgctcatatatatattatattttgctgcccgtaatcacagttcaacctt 738

                                                                        
Query: 707  tcttgtctccagccagaaaatgtttgatttcctactgtttgtcgtacatatgttcgtcta 766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739  tcttgtctccagccagaaaatgtttgatttcctactgtttgtcgtacatatgttcgtcta 798

                                                                        
Query: 767  cctcacaactttttctaaagtattaaaaaagagagataatttatattcaagagtaataga 826
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 799  cctcacaactttttctaaagtattaaaaaagagagaaaatttatattcaagagtaataga 858

                                                                        
Query: 827  gaaagacggtatagacctaccgatgaggtgaggctctgcaagagcgaagacagaatatcc 886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 859  gaaagacggtatagacctaccgatgaggtgaggctctgcaagagcgaagacagaatatcg 918

                                                                        
Query: 887  gccccataaactttttcgaaatccgtaatggtcttctgggaagtcctatagaccaggtcc 946
            ||||   |||||||||||||  | ||||| ||||||||| ||||||||||||||||||||
Sbjct: 919  gcccataaaactttttcgaatccggtaat-gtcttctggaaagtcctatagaccaggtcc 977

                                                            
Query: 947  aaacaatcatcgaactaaatttggc-ttaacattcagaatcataatca 993
            ||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 978  aaacaatcatcgaactaaatttggcatcaacattcagaatcataatca 1025


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7345
Number of Sequences: 1807
Number of extensions: 7345
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)