BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF05FM1.SCF screened BAC_end
(1022 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig685 630 e-180
>3x_Contig685
Length = 2775
Score = 630 bits (318), Expect = e-180
Identities = 403/424 (95%), Gaps = 6/424 (1%)
Strand = Plus / Plus
Query: 507 atattgaattatacaaaaagattgcagaactcgagcttctggaagatccaaaggttgctg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 atattgaattatacaaaaagattgcagaactcgagcttctggaagatccaaaggttgctg 64
Query: 567 cagttctggcccaagttcttttcgatgaagatatcgtatcggatatctctgaacatactg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cagttctggcccaagttcttttcgatgaagatatcgtatcggatatctctgaacatactg 124
Query: 627 cgttcttgncaaaattattgaaggacgaagacttcgaanagaaacttttgggtggtattg 686
|||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 125 cgttcttgcaaaaattattgaaggacgaagacttcgaaaagaactttttgggtggtattg 184
Query: 687 aaagattccttggacttgatc-ccaagaattgatcccattactaccaaagatcttggtcc 745
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aaagattccttggacttgatcaccaagaattgatcccattactaccaaagatcttggtcc 244
Query: 746 aa-tatacaacaacgacatcatttccgaagaagaga-tatcagcttcggtaccaaatgct 803
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 245 aattatacaacaacgacatcatttccgaagaagagattatcagcttcggtaccaaatgct 304
Query: 804 ctaagaagttggtaccaaa-gatgtttctaagaagggtcgtagagctgccaagccattca 862
|||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 305 ctaagaagtttgtaccaaaggatgtttctaagaaggttcgtagagctgccaagccattca 364
Query: 863 ttacttggttgaaaacttgccgaa-aagatgattgagattccggattaagaaaatcctga 921
| |||||||||||||| ||||||| |||||||| ||||| | || ||||||||| |||
Sbjct: 365 tcacttggttgaaaac-tgccgaagaagatgatgaggattcggaataaagaaaatcatga 423
Query: 922 tctt 925
||||
Sbjct: 424 tctt 427
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8856
Number of Sequences: 1807
Number of extensions: 8856
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 1022
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1006
effective length of database: 10,329,639
effective search space: 10391616834
effective search space used: 10391616834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)