BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF06FM1.SCF screened BAC_end
(1003 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1662 1528 0.0
>3x_Contig1662
Length = 14890
Score = 1528 bits (771), Expect = 0.0
Identities = 901/927 (97%), Gaps = 13/927 (1%)
Strand = Plus / Plus
Query: 88 tctgttttcaccgaaggcgaagatatgaccgaattgagagtcagagaatgaatggatacc 147
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tctgttttcaccgaag-cgaagatatgaccgaattgagagtcagagaatgaatggatacc 77
Query: 148 accattattaccaacagagaaataaccccaaacgttggaagaagaacggaagttcaattc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 accattattaccaacagagaaataaccccaaacgttggaagaagaacggaagttcaattc 137
Query: 208 gtgtaaagcaccgccagatgtgtttgaaaccctcatttggatcttcggatgtgatacggc 267
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gtgtaaagcaccgccagatg-gtttgaaaccctcatttggatcttcggatgtgatacggc 196
Query: 268 aggcagtacagtgacctttaggagttggttttctttgagttttagcagactcaggtgtag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aggcagtacagtgacctttaggagttggttttctttgagttttagcagactcaggtgtag 256
Query: 328 agaagttaaagtcaatttcggatgcagattttggatcgacaccgtataacaatctaatat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agaagttaaagtcaatttcggatgcagattttggatcgacaccgtataacaatctaatat 316
Query: 388 ctctgattctgtgcattggaatacccatagcgatttgtaactgggcagacggcaagttaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctctgattctgtgcattggaatacccatagcgatttgtaactgggcagacggcaagttaa 376
Query: 448 caccagtaaccatttctgtggttggatgttcaacttgtaatcttgggttcaactccaaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caccagtaaccatttctgtggttggatgttcaacttgtaatcttgggttcaactccaaga 436
Query: 508 agtagaacttgtcttcatcatgagaatataaatattcgacggtaccagcagaaacgtaac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtagaacttgtcttcatcatgagaatataaatattcgacggtaccagcagaaacgtaac 496
Query: 568 caaccaattgacctaatctgacggctgctttttccatttcagtgaaggtatctggcttag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caaccaattgacctaatctgacggctgctttttccatttcagtgaaggtatctggcttag 556
Query: 628 cgatagttacaggagcttcttcgataatcttttgatgacgtctttgaacagaacaatcac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cgatagttacaggagcttcttcgataatcttttgatgacgtctttgaacagaacaatcac 616
Query: 688 gaccaaatagagagatgttggtaccatattgatcagccaaaagttgaacttccaaatgac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaccaaatagagagatgttggtaccatattgatcagccaaaagttgaacttccaaatgac 676
Query: 748 gagccttaccagccaacttcataataaaaattggagaaccaggaatttcattagcagctt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gagccttaccagccaacttcataataaaaattggagaaccaggaatttcattagcagctt 736
Query: 808 gttggtacaaagacaggaactcatctttattttcgacttttttgataccttta-caccac 866
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 737 gttggtacaaagacaggaactcatcttcattttcgacttttctgatacctttaccaccac 796
Query: 867 cactttc-gaagccttga-cattattggggaaccaa-ttcctt-gcttttttta-aacgt 921
||| ||| |||||||||| ||| |||||| |||||| |||||| ||||| |||| | |||
Sbjct: 797 caccttcggaagccttgaccataattgggaaaccaatttccttggctttctttagaccgt 856
Query: 922 cttctggaga-gaacaccaccctt-tttgtatactttatcttctacag-gaaccagttag 978
|||||||||| ||||| || |||| || ||||||||||||||| |||| || | ||||||
Sbjct: 857 cttctggagacgaacaacaaccttcttggtatactttatcttcgacagagaccaagttag 916
Query: 979 -ttcttta-caacatgaacttcatcga 1003
||||||| ||||||||||||||||||
Sbjct: 917 tttctttatcaacatgaacttcatcga 943
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7423
Number of Sequences: 1807
Number of extensions: 7423
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)