BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF06RM1.SCF screened BAC_end
(999 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1683 0.0
>3x_Contig1741
Length = 21706
Score = 1683 bits (849), Expect = 0.0
Identities = 946/966 (97%), Gaps = 11/966 (1%)
Strand = Plus / Minus
Query: 45 ctttgggttgggtattcgatttcctatttcggtattataataaactctttgattgtccga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19916 ctttgggttgggtattcgatttcctatttcggtattataataaactctttgattgtccga 19857
Query: 105 ttgaccaaatttgggtgtaagggtgtttaactggtgtatgggtgtaagcagtcctaagtt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19856 ttgaccaaatttgggtgtaagggtgtttaactggtgtatgggtgtaagcagtcctaagtt 19797
Query: 165 cttcggatgtctagcatgtttggcatattattcggtcatgtccctttgtcacttcggtta 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19796 cttcggatgtctagcatgtttggcatattattcggtcatgtccctttgtcacttcggtta 19737
Query: 225 tttatttcctatgtgaatgcactataaatatatataaatatatcatcatataatcatata 284
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 19736 tttatttcctatgtgaatgcacgggaaatatatataaatatatcatcatataatcatata 19677
Query: 285 tgacgcatcactagtttcatttgtggacggactcttgtcgtattgcttttcttaaatcag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19676 tgacgcatcactagtttcatttgtggacggactcttgtcgtattgcttttcttaaatcag 19617
Query: 345 ttgacatctcatgaatttctaaactatctaagactctgtctaaatcatgttccgaaagta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19616 ttgacatctcatgaatttctaaactatctaagactctgtctaaatcatgttccgaaagta 19557
Query: 405 ataacttttctccatcggattcatgcttttccttcttgctttcctttaaaatgtcagaat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19556 ataacttttctccatcggattcatgcttttccttcttgctttcctttaaaatgtcagaat 19497
Query: 465 actgttccaggttgataaactcgaacttttgttcctcgctagtgattaatgactccaaat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19496 actgttccaggttgataaactcgaacttttgttcctcgctagtgattaatgactccaaat 19437
Query: 525 gtttggctccgaaatatgccttcaaattgcaatataatctgtaagttaaatatattcctg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19436 gtttggctccgaaatatgccttcaaattgcaatataatctgtaagttaaatatattcctg 19377
Query: 585 gtacgttgggaaccacaggtattagaatcaatggtaaagaaatcggaatcccaagggcac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19376 gtacgttgggaaccacaggtattagaatcaatggtaaagaaatcggaatcccaagggcac 19317
Query: 645 agagaagtgcgtgtttcttatgatattgttgaccttttttcgaaagttgtttcaactgtg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19316 agagaagtgcgtgtttcttatgatattgttgaccttttttcgaaagttgtttcaactgtg 19257
Query: 705 ctataatggtgctttcatccaccacactcctgnggaaatatacatgaatcggctttggtt 764
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 19256 ctataatggtgctttcatccaccacactcctggggaaatatacatgaatcggctttggtt 19197
Query: 765 tcaaagaaa-tactgaatcgtcatttttggccttaacgtactcgtttaaggtaacattat 823
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19196 tcaaagaaattactgaatcgtcatttttggccttaacgtactcgtttaaggtaacattat 19137
Query: 824 ccttggt-ccattttcaatctgtttc-naatataagattcagaagggatggttcgtaatg 881
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 19136 ccttggtcccattttcaatctgtttcaaaatataagattcagaagggatggttcgtaatg 19077
Query: 882 aattctccgtccatggaaattgatcc-acagtttcgttacggttgaaactatctttt--a 938
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 19076 aattctccgtccatggaatttgatccaacagtttcgttacggttgaaactatctttttat 19017
Query: 939 tataacttttttggg-agcttgc-ctgtatacc-aaga-tagcagctttttggg-aagtt 993
||||||||||||||| ||||||| ||| ||||| |||| |||||||||| |||| |||||
Sbjct: 19016 tataacttttttgggaagcttgcactgaataccaaagattagcagctttctgggaaagtt 18957
Query: 994 tggttt 999
||||||
Sbjct: 18956 tggttt 18951
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8145
Number of Sequences: 1807
Number of extensions: 8145
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 999
length of database: 10,358,551
effective HSP length: 16
effective length of query: 983
effective length of database: 10,329,639
effective search space: 10154035137
effective search space used: 10154035137
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)