BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF07FM1.SCF screened BAC_end
(1029 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1347 1152 0.0
>3x_Contig1347
Length = 6130
Score = 1152 bits (581), Expect = 0.0
Identities = 606/612 (99%), Gaps = 3/612 (0%)
Strand = Plus / Minus
Query: 81 ttcaagcgtgaatgcagctccagtcttattagccaataaaacagtagtaaatgttactat 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttcaagcgtgaatgcagctccagtcttattagccaataaaacagtagtaaatgttactat 556
Query: 141 gttgttgagttgacgatccaaagccgatctacgaacccaaaattgtttgaaaaactctgc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gttgttgagttgacgatccaaagccgatctacgaacccaaaattgtttgaaaaactctgc 496
Query: 201 tgctagctcttttctcagatactgaggtgttacaccttcagtcacggaaagcttttgtat 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgctagctcttttctcagatactgaggtgttacaccttcagtcacggaaagcttttgtat 436
Query: 261 aacaaatagaaccgttttcttcatatcttcgttcggtgaattgaattctctctttacaat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aacaaatagaaccgttttcttcatatcttcgttcggtgaattgaattctctctttacaat 376
Query: 321 cttcatcacttcttcagcgtaatacgacgcatattcgggatccatcaacggaatgagaaa 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttcatcacttcttcagcgtaatacgacgcatattcgggatccatcaacggaatgagaaa 316
Query: 381 tcctagagccttcaaaaatgcagctagttctcttcccctgttttgtttaacacctctcca 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcctagagccttcaaaaatgcagctagttctcttcccctgttttgtttaacacctctcca 256
Query: 441 aagtggttcgaggaccggattaaagcgctcaataccatatggctggcagctttgtgccaa 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagtggttcgaggaccggattaaagcgctcaataccatatggctggcagctttgtgccaa 196
Query: 501 tgatgacactgtttgagcggctatgattctcactggaggatgttcatcttgaaatccctt 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tgatgacactgtttgagcggctatgattctcactggaggatgttcatcttgaaatccctt 136
Query: 561 ctctatacatgcgataagatcgtcgaggtatggtaagctaccaatccctactaaaatagc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ctctatacatgcgataagatcgtcgaggtatggtaagctaccaatccctactaaaatagc 76
Query: 621 attttgctgaattatctttatcccagtatgtcttgcct--tccagctttttttcgatcta 678
| |||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct: 75 aatttgctgaattatctttatcccagtatgtcttgccttctctagctctttttcgatcta 16
Query: 679 c-aaccaatcgt 689
| ||||||||||
Sbjct: 15 caaaccaatcgt 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,726
Number of Sequences: 1807
Number of extensions: 12726
Number of successful extensions: 173
Number of sequences better than 1.0e-20: 1
length of query: 1029
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1013
effective length of database: 10,329,639
effective search space: 10463924307
effective search space used: 10463924307
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)