BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZF07RM1.SCF screened BAC_end
(1005 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1727 1281 0.0
>3x_Contig1727
Length = 17872
Score = 1281 bits (646), Expect = 0.0
Identities = 721/737 (97%), Gaps = 7/737 (0%)
Strand = Plus / Plus
Query: 47 cttggatatctgggtttgcaaacaagctacttgtgttgcccatggatagggacttaccgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2814 cttggatatctgggtttgcaaacaagctacttgtgttgcccatggatagggacttaccgt 2873
Query: 107 tgaaatctgtaacacgaacacctttcaaagcaaccacagacccttctggtaaattgaact 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2874 tgaaatctgtaacacgaacacctttcaaagcaaccacagacccttctggtaaattgaact 2933
Query: 167 taatagcttgttcgccccataaaccgagcgatatacacgcacctgaatcatctacgattt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2934 taatagcttgttcgccccataaaccgagcgatatacacgcacctgaatcatctacgattt 2993
Query: 227 ctacatcacgacgatcaaatttctttccagatttagctgcaagttcgaaatgtggaccca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2994 ctacatcacgacgatcaaatttctttccagatttagctgcaagttcgaaatgtggaccca 3053
Query: 287 ctgacttcaagataccaacgacgtcaatagcagtatttttttccacattattgacatcat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3054 ctgacttcaagataccaacgacgtcaatagcagtatttttttccacattattgacatcat 3113
Query: 347 ttagtttgatgaagttgaaatgcatctctggaacatcgttagcatcctcattcatacatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3114 ttagtttgatgaagttgaaatgcatctctggaacatcgttagcatcctcattcatacatt 3173
Query: 407 cttcaacgacacaatctctttctaaacttaattcgtaaggatgcttcaaattagagaact 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3174 cttcaacgacacaatctctttctaaacttaattcgtaaggatgcttcaaattagagaact 3233
Query: 467 gaggtttagcaggttgcactctagcctttgatacaaaataagctttaccctcctgtaaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3234 gaggtttagcaggttgcactctagcctttgatacaaaataagctttaccctcctgtaaaa 3293
Query: 527 tctcgttaaatttgatcgcattatcgttgaacgcagtggctctaatttcaccagaagaat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3294 tctcgttaaatttgatcgcattatcgttgaacgcagtggctctaatttcaccagaagaat 3353
Query: 587 tc-acanattcacattcaagatatggccctcacctctattattttgccacttcttcaaat 645
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3354 ccaacaaattcacattcaagatatggccctcacctctattattttgccacttcttcaaat 3413
Query: 646 -acctttgaaag-aactctggcc-ttattgtccagttgttctgatattgag-aatttgtt 701
||||||||||| |||||||||| |||| |||||||||||||||||| ||| ||||||||
Sbjct: 3414 cacctttgaaagaaactctggcctttatggtccagttgttctgatatggagaaatttgtt 3473
Query: 702 cattggc-aaaataggccttgaatttttggatgacccatttatcgattttgcctt-ggca 759
|| |||| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct: 3474 caatggcaaaaataggccttgaattttgggatgacccattattcgattttgccttgggca 3533
Query: 760 caaaacgtggttgtggg 776
|| ||||||||||||||
Sbjct: 3534 cagaacgtggttgtggg 3550
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,293
Number of Sequences: 1807
Number of extensions: 20293
Number of successful extensions: 256
Number of sequences better than 1.0e-20: 1
length of query: 1005
length of database: 10,358,551
effective HSP length: 16
effective length of query: 989
effective length of database: 10,329,639
effective search space: 10216012971
effective search space used: 10216012971
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)